RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 GOLGA6L4A6NEF3 574 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 CCDC192P0DO97 292 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 CSPP1Q1MSJ5 1256 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 SASS6Q6UVJ0 657 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 KIAA1524Q8TCG1 905 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 FAM200AQ8TCP9 573 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 CLSTN2Q9H4D0 955 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 A0A1B0GUL7 405 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 E7EWF7 191 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 KRT32Q14532 448 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 PI16Q6UXB8 463 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 ZNF771Q7L3S4 317 aaPredicted RBP11.94□□□□□ -0.5
COPB1-201ENST00000249923 NRBP1Q9UHY1 535 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 FDPSP14324 419 aaKnown RBP11.94□□□□□ -0.5
COPB1-201ENST00000249923 CCT2P78371 535 aaKnown RBP11.94□□□□□ -0.5
COPB1-201ENST00000249923 ZNF710Q8N1W2 664 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 SYNE4Q8N205 404 aa11.94□□□□□ -0.5
COPB1-201ENST00000249923 SCAND2PQ9GZW5 306 aaPredicted RBP11.94□□□□□ -0.5
COPB1-201ENST00000249923 CWC25Q9NXE8 425 aaPredicted RBP11.94□□□□□ -0.5
COPB1-201ENST00000249923 SPEF2Q9C093 1822 aa11.93□□□□□ -0.5
COPB1-201ENST00000249923 CEBPZQ03701 1054 aaKnown RBP11.93□□□□□ -0.5
COPB1-201ENST00000249923 WDR17Q8IZU2 1322 aa11.93□□□□□ -0.5
COPB1-201ENST00000249923 AKAP11Q9UKA4 1901 aa11.93□□□□□ -0.5
COPB1-201ENST00000249923 SNW1Q13573 536 aaKnown RBP11.93□□□□□ -0.5
COPB1-201ENST00000249923 HSP90AB3PQ58FF7 597 aa11.93□□□□□ -0.5
COPB1-201ENST00000249923 BRINP3Q76B58 766 aa11.93□□□□□ -0.5
COPB1-201ENST00000249923 DHX32Q7L7V1 743 aaKnown RBP11.93□□□□□ -0.5
COPB1-201ENST00000249923 PTPDC1A2A3K4 754 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 EYA2O00167 538 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 DSCC1Q9BVC3 393 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 TNMDQ9H2S6 317 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 DENND2AQ9ULE3 1009 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 PTGS1P23219 599 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 LRMPQ12912 555 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 KLHL34Q8N239 644 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 GPR108Q9NPR9 543 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 NEDD4P46934 1319 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 HSP90B1P14625 803 aaKnown RBP11.92□□□□□ -0.5
COPB1-201ENST00000249923 PPP4R3BQ5MIZ7 849 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 C11orf57Q6ZUT1 292 aaPredicted RBP11.92□□□□□ -0.5
COPB1-201ENST00000249923 CCDC85AQ96PX6 553 aaPredicted RBP11.92□□□□□ -0.5
COPB1-201ENST00000249923 USP28Q96RU2 1077 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 DNAJC25Q9H1X3 360 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 HELLSQ9NRZ9 838 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 RIC1Q4ADV7 1423 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 PCDH11XQ9BZA7 1347 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 PCDH11YQ9BZA8 1340 aa11.92□□□□□ -0.5
COPB1-201ENST00000249923 PDIA3P30101 505 aaKnown RBP11.91□□□□□ -0.5
COPB1-201ENST00000249923 NKX1-1Q15270 411 aaPredicted RBP11.91□□□□□ -0.5
COPB1-201ENST00000249923 PLA2G4DQ86XP0 818 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 ZCRB1Q8TBF4 217 aaKnown RBP11.91□□□□□ -0.5
COPB1-201ENST00000249923 GJB4Q9NTQ9 266 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 IL15P40933 162 aaPredicted RBP11.91□□□□□ -0.5
COPB1-201ENST00000249923 MYRIPQ8NFW9 859 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 ERCC4Q92889 916 aaPredicted RBP11.91□□□□□ -0.5
COPB1-201ENST00000249923 TRERF1Q96PN7 1200 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 ISCA1Q9BUE6 129 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 GUCY1B3Q02153 619 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 CCDC144BQ3MJ40 725 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 CCDC144CPQ8IYA2 1237 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 NBPF3Q9H094 633 aa11.91□□□□□ -0.5
COPB1-201ENST00000249923 MYH7P12883 1935 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 C4AP0C0L4 1744 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 C4BP0C0L5 1744 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 CDK11BP21127 795 aaKnown RBP11.9□□□□□ -0.5
COPB1-201ENST00000249923 CCDC191Q8NCU4 936 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 DYNC1I1O14576 645 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 RNF113AO15541 343 aaKnown RBP11.9□□□□□ -0.5
COPB1-201ENST00000249923 IQCB1Q15051 598 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 OTUD7BQ6GQQ9 843 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 ENGASEQ8NFI3 743 aa11.9□□□□□ -0.5
COPB1-201ENST00000249923 PUS7LQ9H0K6 701 aaKnown RBP11.9□□□□□ -0.5
COPB1-201ENST00000249923 DDX19AQ9NUU7 478 aaKnown RBP11.9□□□□□ -0.5
COPB1-201ENST00000249923 SLIT2O94813 1529 aa11.9□□□□□ -0.51
COPB1-201ENST00000249923 IFIT1P09914 478 aaKnown RBP11.9□□□□□ -0.51
COPB1-201ENST00000249923 ANTXR2P58335 489 aa11.9□□□□□ -0.51
COPB1-201ENST00000249923 TDRD7Q8NHU6 1098 aaKnown RBP11.9□□□□□ -0.51
COPB1-201ENST00000249923 HPS5Q9UPZ3 1129 aa11.9□□□□□ -0.51
COPB1-201ENST00000249923 CARMIL3Q8ND23 1372 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 ERVV-2B6SEH9 535 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 CIAO1O76071 339 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 PDIA4P13667 645 aaKnown RBP11.89□□□□□ -0.51
COPB1-201ENST00000249923 HAND2P61296 217 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 TOM1L2Q6ZVM7 507 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 BICD2Q8TD16 824 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 FAM89AQ96GI7 184 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 LLPHQ9BRT6 129 aaKnown RBP11.89□□□□□ -0.51
COPB1-201ENST00000249923 RCOR1Q9UKL0 485 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 GTF2F1P35269 517 aaKnown RBP eCLIP11.89□□□□□ -0.513e-9■■■■■ 105.7
COPB1-201ENST00000249923 NAA16Q6N069 864 aaPredicted RBP11.89□□□□□ -0.51
COPB1-201ENST00000249923 CADPS2Q86UW7 1296 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 ECM29Q5VYK3 1845 aa11.89□□□□□ -0.51
COPB1-201ENST00000249923 ZNF75DP51815 510 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 HSPA2P54652 639 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 EVCP57679 992 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 RAB11FIP4Q86YS3 637 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 XAGE2Q96GT9 111 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 H3BQV1 296 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 FKBP4Q02790 459 aaKnown RBP eCLIP11.88□□□□□ -0.51
COPB1-201ENST00000249923 ARID5BQ14865 1188 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms