RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 A1BGP04217 495 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 ZSWIM6Q9HCJ5 1215 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 GLI2P10070 1586 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 NR1I2O75469 434 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 IL15P40933 162 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 RNF17Q9BXT8 1623 aaKnown RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 EIF4A1P60842 406 aaKnown RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 GCP02774 474 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 TNNI3KQ59H18 835 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 ZNF496Q96IT1 587 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 FPGT-TNNI3KV9GXZ4 949 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 SLC5A1P13866 664 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 SETQ01105 290 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 RTN1Q16799 776 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 CDK5RAP3Q96JB5 506 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 ZFYVE16Q7Z3T8 1539 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 CTCFLQ8NI51 663 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 FAM160A1Q05DH4 1040 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 NBPF6Q5VWK0 638 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 NBPF4Q96M43 638 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 TIGD1Q96MW7 591 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 TMOD3Q9NYL9 352 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 KRT18P05783 430 aaKnown RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 ELF2Q15723 593 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 BICDL1Q6ZP65 573 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 METTL22Q9BUU2 404 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 ARHGEF10O15013 1369 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 MTIF2P46199 727 aaKnown RBP5.31□□□□□ -1.56
VPS13C-201ENST00000249837 CATIPQ7Z7H3 387 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 ERO1AQ96HE7 468 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 N4BP3O15049 544 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 FANCCQ00597 558 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 WTAPQ15007 396 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 SLC9C2Q5TAH2 1124 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 IGHMBP2P38935 993 aaKnown RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 MAP3K12Q12852 859 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 ANO1Q5XXA6 986 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 SMAP1Q8IYB5 467 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 LMAN1P49257 510 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 GCKRQ14397 625 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 NUP88Q99567 741 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 LRRC7Q96NW7 1537 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 METP08581 1390 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 PUF60Q9UHX1 559 aaKnown RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 CEP131Q9UPN4 1083 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 TBX22Q9Y458 520 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 GTPBP4Q9BZE4 634 aaKnown RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 TMX4Q9H1E5 349 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 ZNF215Q9UL58 517 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 IBSPP21815 317 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 EVCP57679 992 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 BEND3Q5T5X7 828 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 CCDC12Q8WUD4 166 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 ORAI2Q96SN7 254 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 CRACR2AQ9BSW2 395 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 OGFRQ9NZT2 677 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 FTOQ9C0B1 505 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 PRR36Q9H6K5 1346 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 IKQ13123 557 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 SOGA3Q5TF21 947 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 LLPHQ9BRT6 129 aaKnown RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 CCDC196A0A1B0GTZ2 297 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 XPO4Q9C0E2 1151 aaKnown RBP5.3□□□□□ -1.56
VPS13C-201ENST00000249837 DEF6Q9H4E7 631 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 ARFGAP3Q9NP61 516 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 YEATS2Q9ULM3 1422 aa5.3□□□□□ -1.56
VPS13C-201ENST00000249837 NUTM2BA6NNL0 878 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 NUTM2EB1AL46 878 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 ZFYP08048 801 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 LONRF3Q496Y0 759 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 TAF3Q5VWG9 929 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 NUTM2AQ8IVF1 878 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 DHX37Q8IY37 1157 aaKnown RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 CCDC148Q8NFR7 591 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 PLIN2Q99541 437 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 FEZ1Q99689 392 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 CARD6Q9BX69 1037 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 DHX58Q96C10 678 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 BABAM1Q9NWV8 329 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 MRVI1Q9Y6F6 885 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 SLC4A8Q2Y0W8 1093 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 CACTINQ8WUQ7 758 aaKnown RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 GBP3Q9H0R5 595 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 MFSD6Q6ZSS7 791 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 USP28Q96RU2 1077 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 CDK12Q9NYV4 1490 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 NLRP5P59047 1200 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 PHKBQ93100 1093 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 RGS12O14924 1447 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 ZNF202O95125 648 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 MATR3P43243 847 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 MTX1Q13505 466 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 MKNK2Q9HBH9 465 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 TLR7Q9NYK1 1049 aaKnown RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 GIGYF1O75420 1035 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-201ENST00000249837 SPECC1Q5M775 1068 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 CCDC181Q5TID7 509 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 ZKSCAN3Q9BRR0 538 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 MYL5Q02045 173 aa5.29□□□□□ -1.56
VPS13C-201ENST00000249837 FAM89AQ96GI7 184 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms