RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 BOLA2Q9H3K6 86 aa27.3■■□□□ 1.96
CDX1-201ENST00000231656 ARAP2Q8WZ64 1704 aa27.29■■□□□ 1.96
CDX1-201ENST00000231656 SRGNP10124 158 aa27.29■■□□□ 1.96
CDX1-201ENST00000231656 HSPA4P34932 840 aa27.29■■□□□ 1.96
CDX1-201ENST00000231656 SNAP23O00161 211 aa27.28■■□□□ 1.96
CDX1-201ENST00000231656 RUFY2Q8WXA3 655 aa27.28■■□□□ 1.96
CDX1-201ENST00000231656 CIZ1Q9ULV3 898 aaPredicted RBP27.28■■□□□ 1.96
CDX1-201ENST00000231656 ILDR2Q71H61 639 aa27.27■■□□□ 1.96
CDX1-201ENST00000231656 ZBTB7AO95365 584 aa27.27■■□□□ 1.96
CDX1-201ENST00000231656 GORABQ5T7V8 394 aa27.27■■□□□ 1.96
CDX1-201ENST00000231656 HIP1O00291 1037 aa27.26■■□□□ 1.95
CDX1-201ENST00000231656 SLC5A1P13866 664 aa27.26■■□□□ 1.95
CDX1-201ENST00000231656 NPR1P16066 1061 aa27.26■■□□□ 1.95
CDX1-201ENST00000231656 CCDC158Q5M9N0 1113 aa27.26■■□□□ 1.95
CDX1-201ENST00000231656 BBOX1O75936 387 aa27.25■■□□□ 1.95
CDX1-201ENST00000231656 ANKRD2Q9GZV1 360 aa27.25■■□□□ 1.95
CDX1-201ENST00000231656 MTFR1LQ9H019 292 aa27.25■■□□□ 1.95
CDX1-201ENST00000231656 HSP90AA1P07900 732 aaKnown RBP27.24■■□□□ 1.95
CDX1-201ENST00000231656 IFIT1P09914 478 aaKnown RBP27.24■■□□□ 1.95
CDX1-201ENST00000231656 MASTLQ96GX5 879 aa27.24■■□□□ 1.95
CDX1-201ENST00000231656 UBE4AQ14139 1066 aa27.23■■□□□ 1.95
CDX1-201ENST00000231656 TTC39AQ5SRH9 613 aa27.23■■□□□ 1.95
CDX1-201ENST00000231656 KIAA1211Q6ZU35 1233 aa27.23■■□□□ 1.95
CDX1-201ENST00000231656 SNRKQ9NRH2 765 aa27.23■■□□□ 1.95
CDX1-201ENST00000231656 C10orf71Q711Q0 1435 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 WTIPA6NIX2 430 aaPredicted RBP27.22■■□□□ 1.95
CDX1-201ENST00000231656 NEK4P51957 841 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 SLC51AQ86UW1 340 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 C2CD5Q86YS7 1000 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 HAUS7Q99871 368 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 ATF5Q9Y2D1 282 aaPredicted RBP27.22■■□□□ 1.95
CDX1-201ENST00000231656 PSDA5PKW4 1024 aaPredicted RBP27.22■■□□□ 1.95
CDX1-201ENST00000231656 H0YIN7 160 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 FSD1Q9BTV5 496 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 FOXD4L1Q9NU39 408 aa27.22■■□□□ 1.95
CDX1-201ENST00000231656 ALDH1B1P30837 517 aa27.21■■□□□ 1.95
CDX1-201ENST00000231656 NMIQ13287 307 aaPredicted RBP27.21■■□□□ 1.95
CDX1-201ENST00000231656 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.21■■□□□ 1.95
CDX1-201ENST00000231656 CCDC102BQ68D86 513 aa27.2■■□□□ 1.95
CDX1-201ENST00000231656 TMC4Q7Z404 712 aa27.2■■□□□ 1.95
CDX1-201ENST00000231656 FAM227BQ96M60 508 aa27.2■■□□□ 1.95
CDX1-201ENST00000231656 RFX7Q2KHR2 1363 aa27.2■■□□□ 1.95
CDX1-201ENST00000231656 CACNA1SQ13698 1873 aa27.2■■□□□ 1.94
CDX1-201ENST00000231656 ZNF512BQ96KM6 892 aaPredicted RBP27.2■■□□□ 1.94
CDX1-201ENST00000231656 DNAJC2Q99543 621 aaKnown RBP27.2■■□□□ 1.94
CDX1-201ENST00000231656 NDUFB9Q9Y6M9 179 aa27.2■■□□□ 1.94
CDX1-201ENST00000231656 LRRC37AA6NMS7 1700 aa27.19■■□□□ 1.94
CDX1-201ENST00000231656 AKAP11Q9UKA4 1901 aa27.19■■□□□ 1.94
CDX1-201ENST00000231656 PPEF1O14829 653 aaPredicted RBP27.19■■□□□ 1.94
CDX1-201ENST00000231656 PHKA1P46020 1223 aa27.19■■□□□ 1.94
CDX1-201ENST00000231656 MCM2P49736 904 aa27.19■■□□□ 1.94
CDX1-201ENST00000231656 PTH1RQ03431 593 aa27.19■■□□□ 1.94
CDX1-201ENST00000231656 ZNF622Q969S3 477 aaKnown RBP eCLIP27.19■■□□□ 1.94
CDX1-201ENST00000231656 EDC3Q96F86 508 aaKnown RBP27.19■■□□□ 1.94
CDX1-201ENST00000231656 ANKIB1Q9P2G1 1089 aa27.19■■□□□ 1.94
CDX1-201ENST00000231656 SNX14Q9Y5W7 946 aa27.19■■□□□ 1.94
CDX1-201ENST00000231656 KCNJ4P48050 445 aa27.18■■□□□ 1.94
CDX1-201ENST00000231656 STYK1Q6J9G0 422 aa27.18■■□□□ 1.94
CDX1-201ENST00000231656 IL27Q8NEV9 243 aa27.18■■□□□ 1.94
CDX1-201ENST00000231656 XDHP47989 1333 aa27.18■■□□□ 1.94
CDX1-201ENST00000231656 MED23Q9ULK4 1368 aa27.18■■□□□ 1.94
CDX1-201ENST00000231656 KIF13BQ9NQT8 1826 aa27.17■■□□□ 1.94
CDX1-201ENST00000231656 POLD1P28340 1107 aa27.17■■□□□ 1.94
CDX1-201ENST00000231656 CHRNA5P30532 468 aa27.17■■□□□ 1.94
CDX1-201ENST00000231656 SCARF1Q14162 830 aa27.17■■□□□ 1.94
CDX1-201ENST00000231656 A0A0D9SFI3 127 aa27.17■■□□□ 1.94
CDX1-201ENST00000231656 ARID4AP29374 1257 aaPredicted RBP27.17■■□□□ 1.94
CDX1-201ENST00000231656 RAB3GAP1Q15042 981 aa27.17■■□□□ 1.94
CDX1-201ENST00000231656 ZNF804BA4D1E1 1349 aa27.16■■□□□ 1.94
CDX1-201ENST00000231656 CCDC171Q6TFL3 1326 aa27.16■■□□□ 1.94
CDX1-201ENST00000231656 BCAMP50895 628 aa27.16■■□□□ 1.94
CDX1-201ENST00000231656 GPSM2P81274 684 aa27.16■■□□□ 1.94
CDX1-201ENST00000231656 SP8Q8IXZ3 490 aa27.16■■□□□ 1.94
CDX1-201ENST00000231656 KCNB2Q92953 911 aa27.16■■□□□ 1.94
CDX1-201ENST00000231656 ATP6V0A2Q9Y487 856 aa27.16■■□□□ 1.94
CDX1-201ENST00000231656 GOLGB1Q14789 3259 aaKnown RBP27.16■■□□□ 1.94
CDX1-201ENST00000231656 UQCRFS1P1P0C7P4 283 aa27.15■■□□□ 1.94
CDX1-201ENST00000231656 MCAMP43121 646 aa27.15■■□□□ 1.94
CDX1-201ENST00000231656 RASEFQ8IZ41 740 aa27.15■■□□□ 1.94
CDX1-201ENST00000231656 PAG1Q9NWQ8 432 aa27.15■■□□□ 1.94
CDX1-201ENST00000231656 LEMD3Q9Y2U8 911 aa27.15■■□□□ 1.94
CDX1-201ENST00000231656 NSFL1CQ9UNZ2 370 aaKnown RBP27.14■■□□□ 1.94
CDX1-201ENST00000231656 DLEC1Q9Y238 1755 aa27.14■■□□□ 1.94
CDX1-201ENST00000231656 GOLIM4O00461 696 aa27.14■■□□□ 1.93
CDX1-201ENST00000231656 KLRK1P26718 216 aa27.14■■□□□ 1.93
CDX1-201ENST00000231656 MCM4P33991 863 aa27.14■■□□□ 1.93
CDX1-201ENST00000231656 UPF3BQ9BZI7 483 aaKnown RBP27.14■■□□□ 1.93
CDX1-201ENST00000231656 SLX4Q8IY92 1834 aa27.13■■□□□ 1.93
CDX1-201ENST00000231656 DEKP35659 375 aaKnown RBP27.13■■□□□ 1.93
CDX1-201ENST00000231656 GYG1P46976 350 aa27.13■■□□□ 1.93
CDX1-201ENST00000231656 FKBP4Q02790 459 aaKnown RBP eCLIP27.13■■□□□ 1.93
CDX1-201ENST00000231656 PI16Q6UXB8 463 aa27.13■■□□□ 1.93
CDX1-201ENST00000231656 FAM84BQ96KN1 310 aaPredicted RBP27.13■■□□□ 1.93
CDX1-201ENST00000231656 PODXL2Q9NZ53 605 aa27.13■■□□□ 1.93
CDX1-201ENST00000231656 LTBP1Q14766 1721 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 CAVIN4Q5BKX8 364 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 TNPO1Q92973 898 aaKnown RBP27.12■■□□□ 1.93
CDX1-201ENST00000231656 TMX3Q96JJ7 454 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 SGIP1Q9BQI5 828 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 ZAP70P43403 619 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms