RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 IL27Q8NEV9 243 aa21.84■■□□□ 1.09
VIM-201ENST00000224237 ANTXR1Q9H6X2 564 aa21.84■■□□□ 1.09
VIM-201ENST00000224237 RPS8P62241 208 aaKnown RBP21.83■■□□□ 1.09
VIM-201ENST00000224237 ST5P78524 1137 aa21.83■■□□□ 1.09
VIM-201ENST00000224237 MCMDC2Q4G0Z9 681 aa21.83■■□□□ 1.09
VIM-201ENST00000224237 ZAP70P43403 619 aa21.83■■□□□ 1.08
VIM-201ENST00000224237 PHKA1P46020 1223 aa21.83■■□□□ 1.08
VIM-201ENST00000224237 DEFB132Q7Z7B7 95 aa21.83■■□□□ 1.08
VIM-201ENST00000224237 ZNF589Q86UQ0 364 aaPredicted RBP21.83■■□□□ 1.08
VIM-201ENST00000224237 MAP4K1Q92918 833 aa21.83■■□□□ 1.08
VIM-201ENST00000224237 HELLSQ9NRZ9 838 aa21.83■■□□□ 1.08
VIM-201ENST00000224237 MINPP1Q9UNW1 487 aa21.82■■□□□ 1.08
VIM-201ENST00000224237 RNF113AO15541 343 aaKnown RBP21.81■■□□□ 1.08
VIM-201ENST00000224237 CHGBP05060 677 aa21.81■■□□□ 1.08
VIM-201ENST00000224237 ZFYP08048 801 aaPredicted RBP21.81■■□□□ 1.08
VIM-201ENST00000224237 UBE4AQ14139 1066 aa21.81■■□□□ 1.08
VIM-201ENST00000224237 TTF1Q15361 905 aaPredicted RBP21.81■■□□□ 1.08
VIM-201ENST00000224237 ZMYM1Q5SVZ6 1142 aa21.81■■□□□ 1.08
VIM-201ENST00000224237 MSL1Q68DK7 614 aa21.81■■□□□ 1.08
VIM-201ENST00000224237 PI16Q6UXB8 463 aa21.81■■□□□ 1.08
VIM-201ENST00000224237 WTIPA6NIX2 430 aaPredicted RBP21.8■■□□□ 1.08
VIM-201ENST00000224237 NECTIN1Q15223 517 aa21.8■■□□□ 1.08
VIM-201ENST00000224237 SLC51AQ86UW1 340 aa21.8■■□□□ 1.08
VIM-201ENST00000224237 RBM8AQ9Y5S9 174 aaKnown RBP21.8■■□□□ 1.08
VIM-201ENST00000224237 SNX14Q9Y5W7 946 aa21.8■■□□□ 1.08
VIM-201ENST00000224237 MYH7P12883 1935 aa21.8■■□□□ 1.08
VIM-201ENST00000224237 KCNJ4P48050 445 aa21.79■■□□□ 1.08
VIM-201ENST00000224237 NLGN1Q8N2Q7 840 aa21.79■■□□□ 1.08
VIM-201ENST00000224237 SLKQ9H2G2 1235 aaPredicted RBP21.79■■□□□ 1.08
VIM-201ENST00000224237 NEK4P51957 841 aa21.79■■□□□ 1.08
VIM-201ENST00000224237 KCNB2Q92953 911 aa21.79■■□□□ 1.08
VIM-201ENST00000224237 SEC62Q99442 399 aaKnown RBP21.79■■□□□ 1.08
VIM-201ENST00000224237 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.79■■□□□ 1.08
VIM-201ENST00000224237 ANKRD2Q9GZV1 360 aa21.79■■□□□ 1.08
VIM-201ENST00000224237 SF3B2Q13435 895 aaKnown RBP21.78■■□□□ 1.08
VIM-201ENST00000224237 GRAPQ13588 217 aa21.78■■□□□ 1.08
VIM-201ENST00000224237 SLC15A2Q16348 729 aa21.78■■□□□ 1.08
VIM-201ENST00000224237 ZSCAN25Q6NSZ9 544 aa21.78■■□□□ 1.08
VIM-201ENST00000224237 PRPF40BQ6NWY9 871 aaKnown RBP21.78■■□□□ 1.08
VIM-201ENST00000224237 GRAPLQ8TC17 118 aaPredicted RBP21.78■■□□□ 1.08
VIM-201ENST00000224237 CYP2E1P05181 493 aaPredicted RBP21.77■■□□□ 1.08
VIM-201ENST00000224237 ZKSCAN1P17029 563 aaPredicted RBP21.77■■□□□ 1.08
VIM-201ENST00000224237 MCM2P49736 904 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 CRY2Q49AN0 593 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 RNF20Q5VTR2 975 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 HMG20BQ9P0W2 317 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 BAG6P46379 1132 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 SLFNL1Q499Z3 407 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 RASEFQ8IZ41 740 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 SPATA5Q8NB90 893 aa21.77■■□□□ 1.08
VIM-201ENST00000224237 RPGRQ92834 1020 aaKnown RBP21.77■■□□□ 1.08
VIM-201ENST00000224237 MMP10P09238 476 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 BCAMP50895 628 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 RASGRF1Q13972 1273 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 CREB3L3Q68CJ9 461 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 CCDC129Q6ZRS4 1044 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 SPRYD3Q8NCJ5 442 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 STK32BQ9NY57 414 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 ZNF804BA4D1E1 1349 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 MAST3O60307 1309 aa21.76■■□□□ 1.07
VIM-201ENST00000224237 HSP90AA1P07900 732 aaKnown RBP21.75■■□□□ 1.07
VIM-201ENST00000224237 NRXN2Q9P2S2 1712 aa21.75■■□□□ 1.07
VIM-201ENST00000224237 ANKRD31Q8N7Z5 1873 aa21.75■■□□□ 1.07
VIM-201ENST00000224237 CAVIN4Q5BKX8 364 aa21.75■■□□□ 1.07
VIM-201ENST00000224237 APPBP2Q92624 585 aa21.75■■□□□ 1.07
VIM-201ENST00000224237 DOCK2Q92608 1830 aa21.74■■□□□ 1.07
VIM-201ENST00000224237 SLC27A2O14975 620 aa21.74■■□□□ 1.07
VIM-201ENST00000224237 DSCC1Q9BVC3 393 aa21.74■■□□□ 1.07
VIM-201ENST00000224237 GNL3LQ9NVN8 582 aaKnown RBP21.74■■□□□ 1.07
VIM-201ENST00000224237 U3KPZ7 1027 aaPredicted RBP21.74■■□□□ 1.07
VIM-201ENST00000224237 WASHC4Q2M389 1173 aa21.73■■□□□ 1.07
VIM-201ENST00000224237 OSBP2Q969R2 916 aa21.73■■□□□ 1.07
VIM-201ENST00000224237 UPF3BQ9BZI7 483 aaKnown RBP21.73■■□□□ 1.07
VIM-201ENST00000224237 TM6SF1Q9BZW5 370 aa21.73■■□□□ 1.07
VIM-201ENST00000224237 PIH1D3Q9NQM4 214 aaKnown RBP21.73■■□□□ 1.07
VIM-201ENST00000224237 ADD2P35612 726 aa21.73■■□□□ 1.07
VIM-201ENST00000224237 RBM17Q96I25 401 aaKnown RBP21.73■■□□□ 1.07
VIM-201ENST00000224237 PDGFDQ9GZP0 370 aaPredicted RBP21.73■■□□□ 1.07
VIM-201ENST00000224237 M0R2C6 588 aa21.72■■□□□ 1.07
VIM-201ENST00000224237 IDH1O75874 414 aaKnown RBP21.72■■□□□ 1.07
VIM-201ENST00000224237 UBE3CQ15386 1083 aa21.72■■□□□ 1.07
VIM-201ENST00000224237 KLRG2A4D1S0 409 aaPredicted RBP21.71■■□□□ 1.07
VIM-201ENST00000224237 KLRK1P26718 216 aa21.71■■□□□ 1.07
VIM-201ENST00000224237 TSGA10IPQ3SY00 556 aa21.71■■□□□ 1.07
VIM-201ENST00000224237 SLC9C2Q5TAH2 1124 aa21.71■■□□□ 1.07
VIM-201ENST00000224237 VPS37DQ86XT2 251 aa21.71■■□□□ 1.07
VIM-201ENST00000224237 MYO5AQ9Y4I1 1855 aaKnown RBP21.71■■□□□ 1.07
VIM-201ENST00000224237 QSER1Q2KHR3 1735 aa21.71■■□□□ 1.07
VIM-201ENST00000224237 CASTP20810 708 aaKnown RBP21.71■■□□□ 1.07
VIM-201ENST00000224237 GYG1P46976 350 aa21.71■■□□□ 1.07
VIM-201ENST00000224237 PARP3Q9Y6F1 533 aa21.71■■□□□ 1.07
VIM-201ENST00000224237 RPAP1Q9BWH6 1393 aaPredicted RBP21.7■■□□□ 1.06
VIM-201ENST00000224237 HSPD1P10809 573 aaKnown RBP21.7■■□□□ 1.06
VIM-201ENST00000224237 PSMA5P28066 241 aa21.7■■□□□ 1.06
VIM-201ENST00000224237 HOXA10P31260 410 aaPredicted RBP21.7■■□□□ 1.06
VIM-201ENST00000224237 MAP3K12Q12852 859 aa21.7■■□□□ 1.06
VIM-201ENST00000224237 JAKMIP1Q96N16 626 aaKnown RBP21.7■■□□□ 1.06
VIM-201ENST00000224237 ADCK5Q3MIX3 580 aa21.69■■□□□ 1.06
VIM-201ENST00000224237 FAM84BQ96KN1 310 aaPredicted RBP21.69■■□□□ 1.06
VIM-201ENST00000224237 BRIP1Q9BX63 1249 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms