RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CROCC2H7BZ55 1655 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 ZNF189O75820 626 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 PRKAR2BP31323 418 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 MTIF2P46199 727 aaKnown RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 SLC17A8Q8NDX2 589 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 KLHL10Q6JEL2 608 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 DRC3Q9H069 523 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 NKIRAS1Q9NYS0 192 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 VIRMAQ69YN4 1812 aaKnown RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 TEX14Q8IWB6 1497 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC62Q6P9F0 684 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 NCOA7Q8NI08 942 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 NUF2Q9BZD4 464 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 NLRP5P59047 1200 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 UBE4AQ14139 1066 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC96Q2M329 555 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 CDAN1Q8IWY9 1227 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 ZNF444Q8N0Y2 327 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 ZPR1O75312 459 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 LMAN1P49257 510 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 HDAC1Q13547 482 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 SEPT14Q6ZU15 432 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC117Q8IWD4 279 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 FAM76AQ8TAV0 307 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 IQSEC3Q9UPP2 1182 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 PDZRN3Q9UPQ7 1066 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 URI1O94763 535 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 FKBP4Q02790 459 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 TAF7Q15545 349 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 NUTM2DQ5VT03 806 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC84Q86UT8 332 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 NUTM2AQ8IVF1 878 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 MMRN2Q9H8L6 949 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 UQCRFS1P1P0C7P4 283 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 TTC31Q49AM3 519 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-201ENST00000011700 SYCP3Q8IZU3 236 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 RAI14Q9P0K7 980 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 ORC3Q9UBD5 711 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-201ENST00000011700 KIF20BQ96Q89 1820 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 GOLGA8CPA6NN73 597 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 PLIN1O60240 522 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 NBPF11Q86T75 865 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 TRIM35Q9UPQ4 493 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC114Q96M63 670 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 LLPHQ9BRT6 129 aaKnown RBP6.85□□□□□ -1.31
VPS13D-201ENST00000011700 ELL2O00472 640 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-201ENST00000011700 INF2Q27J81 1249 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 RNF187Q5TA31 235 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-201ENST00000011700 MFSD6Q6ZSS7 791 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 HS2ST1Q7LGA3 356 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 MAATS1Q7Z4T9 603 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 PRXQ9BXM0 1461 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 PFDN6O15212 129 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 TICAM2Q86XR7 235 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 ZHX1Q9UKY1 873 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-201ENST00000011700 AKR1B10O60218 316 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 ZNF853P0CG23 659 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 NUP133Q8WUM0 1156 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 RASSF4Q9H2L5 321 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 C6orf50Q9HD87 102 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 SLC8A1P32418 973 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 IFT20Q8IY31 132 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 ESR2Q92731 530 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 FAM81BQ96LP2 452 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 LZTS2Q9BRK4 669 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC40Q4G0X9 1142 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 BABAM1Q9NWV8 329 aa6.85□□□□□ -1.31
VPS13D-201ENST00000011700 UTP11Q9Y3A2 253 aaKnown RBP6.85□□□□□ -1.31
VPS13D-201ENST00000011700 IRX3P78415 501 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 MRPS9P82933 396 aaKnown RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 P3H4Q92791 437 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 MRGBPQ9NV56 204 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 TTF2Q9UNY4 1162 aaKnown RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 CPLX4Q7Z7G2 160 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 HAUS1Q96CS2 278 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 SH2D4AQ9H788 454 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 KDM5DQ9BY66 1539 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 IARSP41252 1262 aaKnown RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 RNASELQ05823 741 aaKnown RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 TMED8Q6PL24 325 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 IWS1Q96ST2 819 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 ADAMTS8Q9UP79 889 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 SYKP43405 635 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 UBASH3AP57075 661 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 RTEL1Q9NZ71 1219 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 OGFRQ9NZT2 677 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 SHANK2Q9UPX8 1470 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 TOPBP1Q92547 1522 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 A0A1B0GUL7 405 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 CETN3O15182 167 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 STX10O60499 249 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 GNA14O95837 355 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 RGS22Q8NE09 1264 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 FAM177A1Q8N128 213 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 CRACR2BQ8N4Y2 399 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC124Q96CT7 223 aaKnown RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 DNMT1P26358 1616 aaKnown RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 AOX1Q06278 1338 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 STAT6P42226 847 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 CWC27Q6UX04 472 aaKnown RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms