RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MCMDC2Q4G0Z9 681 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 ZNF592Q92610 1267 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 NWD2Q9ULI1 1742 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 DDX58O95786 925 aaKnown RBP12.61□□□□□ -0.39
USP28-201ENST00000003302 NCBP1Q09161 790 aaKnown RBP12.61□□□□□ -0.39
USP28-201ENST00000003302 ELP1O95163 1332 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 SCN11AQ9UI33 1791 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 GOLGA6L4A6NEF3 574 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 NPHP1O15259 732 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 PUS7LQ9H0K6 701 aaKnown RBP12.61□□□□□ -0.39
USP28-201ENST00000003302 H3BQV1 296 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 FGD1P98174 961 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 HSP90AA4PQ58FG1 418 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 IFFO2Q5TF58 517 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 CCAR1Q8IX12 1150 aaKnown RBP12.6□□□□□ -0.39
USP28-201ENST00000003302 DHX40Q8IX18 779 aaKnown RBP12.6□□□□□ -0.39
USP28-201ENST00000003302 KIF3AQ9Y496 699 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 MRC1P22897 1456 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 PSMA5P28066 241 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 DPCR1Q3MIW9 517 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 KBTBD3Q8NAB2 608 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 FAM89AQ96GI7 184 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 FMNL2Q96PY5 1086 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 PAG1Q9NWQ8 432 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 ADAMTSL3P82987 1691 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 ARFGEF2Q9Y6D5 1785 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 A0A1B0GUL7 405 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 PDIA3P30101 505 aaKnown RBP12.6□□□□□ -0.39
USP28-201ENST00000003302 EXOSC10Q01780 885 aaKnown RBP12.6□□□□□ -0.39
USP28-201ENST00000003302 TSGA10IPQ3SY00 556 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 SMARCC2Q8TAQ2 1214 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 CLIP2Q9UDT6 1046 aa12.6□□□□□ -0.39
USP28-201ENST00000003302 ZNF142P52746 1687 aaPredicted RBP12.6□□□□□ -0.39
USP28-201ENST00000003302 FANCGO15287 622 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 GTF2F1P35269 517 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP28-201ENST00000003302 NDUFA8P51970 172 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 NBPF11Q86T75 865 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 PROSER2Q86WR7 435 aaPredicted RBP12.59□□□□□ -0.39
USP28-201ENST00000003302 SLIT3O75094 1523 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 ENGASEQ8NFI3 743 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 NBPF3Q9H094 633 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 TRPM3Q9HCF6 1732 aaPredicted RBP12.59□□□□□ -0.39
USP28-201ENST00000003302 GLIPR1L2Q4G1C9 344 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 MYL10Q9BUA6 226 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 ST7Q9NRC1 585 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 PCDHA7Q9UN72 937 aa12.59□□□□□ -0.39
USP28-201ENST00000003302 SALL1Q9NSC2 1324 aa12.58□□□□□ -0.39
USP28-201ENST00000003302 SNRPA1P09661 255 aaKnown RBP12.58□□□□□ -0.4
USP28-201ENST00000003302 HMGN5P82970 282 aaKnown RBP12.58□□□□□ -0.4
USP28-201ENST00000003302 RNF20Q5VTR2 975 aa12.58□□□□□ -0.4
USP28-201ENST00000003302 ANTXR2P58335 489 aa12.58□□□□□ -0.4
USP28-201ENST00000003302 SCAND2PQ9GZW5 306 aaPredicted RBP12.58□□□□□ -0.4
USP28-201ENST00000003302 AOPEPQ8N6M6 819 aa12.58□□□□□ -0.4
USP28-201ENST00000003302 TDRD7Q8NHU6 1098 aaKnown RBP12.58□□□□□ -0.4
USP28-201ENST00000003302 HPS5Q9UPZ3 1129 aa12.58□□□□□ -0.4
USP28-201ENST00000003302 TACC3Q9Y6A5 838 aa12.58□□□□□ -0.4
USP28-201ENST00000003302 WTIPA6NIX2 430 aaPredicted RBP12.57□□□□□ -0.4
USP28-201ENST00000003302 ADAMTS7Q9UKP4 1686 aa12.57□□□□□ -0.4
USP28-201ENST00000003302 PHRF1Q9P1Y6 1649 aaKnown RBP12.57□□□□□ -0.4
USP28-201ENST00000003302 MROH7-TTC4A0A0A0MT08 1334 aa12.57□□□□□ -0.4
USP28-201ENST00000003302 ATP1A3P13637 1013 aa12.57□□□□□ -0.4
USP28-201ENST00000003302 MARCKSP29966 332 aaPredicted RBP12.57□□□□□ -0.4
USP28-201ENST00000003302 ME1P48163 572 aa12.57□□□□□ -0.4
USP28-201ENST00000003302 TTC5Q8N0Z6 440 aa12.57□□□□□ -0.4
USP28-201ENST00000003302 CCDC94Q9BW85 323 aaPredicted RBP12.57□□□□□ -0.4
USP28-201ENST00000003302 BAZ2BQ9UIF8 2168 aaKnown RBP12.57□□□□□ -0.4
USP28-201ENST00000003302 C1orf167Q5SNV9 1468 aa12.57□□□□□ -0.4
USP28-201ENST00000003302 PFKFB2O60825 505 aa12.57□□□□□ -0.4
USP28-201ENST00000003302 LETM1O95202 739 aaPredicted RBP12.57□□□□□ -0.4
USP28-201ENST00000003302 DHX32Q7L7V1 743 aaKnown RBP12.57□□□□□ -0.4
USP28-201ENST00000003302 TNNT1P13805 278 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 ZAP70P43403 619 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 SPECC1Q5M775 1068 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 FGAP02671 866 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 IFNL2Q8IZJ0 200 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 FSIP1Q8NA03 581 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 CARMIL3Q8ND23 1372 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 WDHD1O75717 1129 aaPredicted RBP12.56□□□□□ -0.4
USP28-201ENST00000003302 TATP17735 454 aaPredicted RBP12.56□□□□□ -0.4
USP28-201ENST00000003302 CABP4P57796 275 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 ZMYM1Q5SVZ6 1142 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 LRRC8AQ8IWT6 810 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 PHKBQ93100 1093 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 MYH15Q9Y2K3 1946 aa12.56□□□□□ -0.4
USP28-201ENST00000003302 H7C1W4 665 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 FOXN1O15353 648 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 CCZ1BP86790 482 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 CCZ1P86791 482 aaPredicted RBP12.55□□□□□ -0.4
USP28-201ENST00000003302 CMTR1Q8N1G2 835 aaKnown RBP12.55□□□□□ -0.4
USP28-201ENST00000003302 PRIMPOLQ96LW4 560 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 GPTP24298 496 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 IFIT1P09914 478 aaKnown RBP12.55□□□□□ -0.4
USP28-201ENST00000003302 PDCP20941 246 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 HSD3B7Q9H2F3 369 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 RCOR1Q9UKL0 485 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 HELBQ8NG08 1087 aaPredicted RBP12.55□□□□□ -0.4
USP28-201ENST00000003302 DPF2Q92785 391 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 HMG20BQ9P0W2 317 aa12.55□□□□□ -0.4
USP28-201ENST00000003302 TJP1Q07157 1748 aa12.54□□□□□ -0.4
USP28-201ENST00000003302 CAMTA1Q9Y6Y1 1673 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms