RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PDX1P52945 283 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 LSM6P62312 80 aaKnown RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 PRDX4Q13162 271 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 PDCD1Q15116 288 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 FAM189A2Q15884 450 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 ACTBL2Q562R1 376 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 Q5PR19 223 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 WDR74Q6RFH5 385 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 ANKRD9Q96BM1 317 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 ZNF479Q96JC4 524 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 AMDHD1Q96NU7 426 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 MCHR1Q99705 422 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 RNF126Q9BV68 326 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 DPH1Q9BZG8 443 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 OR51B6Q9H340 312 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 SRMSQ9H3Y6 488 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 POT1Q9NUX5 634 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 DOK5Q9P104 306 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 NOP16Q9Y3C1 178 aaKnown RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 ABCA7Q8IZY2 2146 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 TMEM212A6NML5 194 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 AGRPO00253 132 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 ARPC3O15145 178 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 TNFSF14O43557 240 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 PRICKLE3O43900 615 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 TGFB1P01137 390 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 ZNF888P0CJ79 500 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 KIR3DL2P43630 455 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 SLC25A1P53007 311 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 CLDN2P57739 230 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 TBPL1P62380 186 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 ZFP36L1Q07352 338 aaKnown RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 TGM3Q08188 693 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 DUSP8Q13202 625 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 IL15RAQ13261 267 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 CLINT1Q14677 625 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 TMEM176BQ3YBM2 270 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 TMEM35AQ53FP2 167 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 LMNTD1Q8N9Z9 388 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 RCBTB1Q8NDN9 531 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 CDS1Q92903 461 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 RAB8BQ92930 207 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 GCDHQ92947 438 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 SCAMP4Q969E2 229 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 MISP3Q96FF7 219 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 SCGB3A2Q96PL1 93 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 INTS14Q96SY0 518 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 NMNAT2Q9BZQ4 307 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 MTHFD2LQ9H903 347 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 ZDHHC8Q9ULC8 765 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 V9GYS6 101 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 NUP214P35658 2090 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 MUC6Q6W4X9 2439 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 C9J4A7 227 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 H3BMH7 237 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 PLPP1O14494 284 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 CDC42EP2O14613 210 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 OR1F1O43749 312 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 C1orf105O95561 183 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 HLA-AP01891 365 aaKnown RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 THY1P04216 161 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 PCCBP05166 539 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 CCKBRP32239 447 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 MPIP34949 423 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 CDC34P49427 236 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 STXBP1P61764 594 aaKnown RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 REEP5Q00765 189 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 GLO1Q04760 184 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 BEX5Q5H9J7 111 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 SHISA2Q6UWI4 295 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 MED25Q71SY5 747 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 BIVMQ86UB2 503 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 GKN2Q86XP6 184 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 TGIF2LXQ8IUE1 241 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 SELENOHQ8IZQ5 122 aaKnown RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 MFSD9Q8NBP5 474 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 OR7G2Q8NG99 324 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 OR5T3Q8NGG3 340 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 OR13C3Q8NGS6 347 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 NUBPLQ8TB37 319 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 MCHR2Q969V1 340 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 PPP1R14AQ96A00 147 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 TMEM159Q96B96 161 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 GPX7Q96SL4 187 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 AIF1LQ9BQI0 150 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 SLC35B3Q9H1N7 401 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 FN3KRPQ9HA64 309 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 TM7SF3Q9NS93 570 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 PRODH2Q9UF12 536 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 PITPNC1Q9UKF7 332 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 HSF4Q9ULV5 492 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 ZNF443Q9Y2A4 671 aaPredicted RBP4.69□□□□□ -1.66
USP28-213ENST00000544967 MEMO1Q9Y316 297 aa4.69□□□□□ -1.66
USP28-213ENST00000544967 FRYLO94915 3013 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 WDR87Q6ZQQ6 2873 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 A0A0A6YYD5 115 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 RAB27BO00194 218 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ITGB1BP1O14713 200 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 CH25HO95992 272 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 CD3DP04234 171 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms