RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 GOSR1O95249 250 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 PNLIPP16233 465 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 CHATP28329 748 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 KIR3DL2P43630 455 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 RAB11AP62491 216 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 RUNX1Q01196 453 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 MFGE8Q08431 387 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 DMWDQ09019 674 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 KIRREL2Q6UWL6 708 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 RTL10Q7L3V2 364 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF547Q8IVP9 402 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 EID2Q8N6I1 236 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 OR4K15Q8NH41 348 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 C2orf15Q8WU43 125 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 HAS2Q92819 552 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 ZC2HC1AQ96GY0 325 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 SCRT1Q9BWW7 348 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 ZDHHC5Q9C0B5 715 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 Q9N2J8 555 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 GDE1Q9NZC3 331 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 MRPS2Q9Y399 296 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 MYO7BQ6PIF6 2116 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 TDRD6O60522 2096 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 RDH16O75452 317 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF708P17019 499 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 BMP5P22003 454 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 SLC6A6P31641 620 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 POLR2HP52434 150 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 RND3P61587 244 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 SNRPD1P62314 119 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 MAP2K5Q13163 448 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 RTP5Q14D33 572 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 DEFB134Q4QY38 66 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 C1orf189Q5VU69 101 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 MED25Q71SY5 747 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 VN1R2Q8NFZ6 395 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 RSC1A1Q92681 617 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 TMEM230Q96A57 120 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 MOGAT1Q96PD6 335 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 AIF1LQ9BQI0 150 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF426Q9BUY5 554 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 MAGT1Q9H0U3 335 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 KCNK6Q9Y257 313 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 STARD10Q9Y365 291 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 REV3LO60673 3130 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 EML5Q05BV3 1969 aa6.47□□□□□ -1.37
LIMCH1-207ENST00000508466 ZFP92A6NM28 416 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 NUPR1O60356 82 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 ACAA2P42765 397 aaKnown RBP6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 SLC25A1P53007 311 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 FGF8P55075 233 aaPredicted RBP6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 VAMP2P63027 116 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 FHL1Q13642 323 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 PRSS54Q6PEW0 395 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 BRICD5Q6PL45 260 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 TMEM64Q6YI46 380 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF66Q6ZN08 573 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 TMEM25Q86YD3 366 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 BATF2Q8N1L9 274 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 OR4X1Q8NH49 305 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 EXTL1Q92935 676 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 SAT2Q96F10 170 aaPredicted RBP6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 HIST1H2AAQ96QV6 131 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 SGPP1Q9BX95 441 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 LMAN2LQ9H0V9 348 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 DPEP2Q9H4A9 486 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 MTHFD2LQ9H903 347 aaPredicted RBP6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 LMAN1LQ9HAT1 526 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 INPP5EQ9NRR6 644 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 SERINC1Q9NRX5 453 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 GPR173Q9NS66 373 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 STARD5Q9NSY2 213 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 FAM186AA6NE01 2351 aa6.46□□□□□ -1.37
LIMCH1-207ENST00000508466 A0A0G2JLL6 359 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 C1QTNF3-AMACRE9PGA6 284 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 K7EQS6 105 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 HSPA12AO43301 675 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 TIMP1P01033 207 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 LMO1P25800 156 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 BCL6P41182 706 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 APOBEC1P41238 236 aaKnown RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 PRSS12P56730 875 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 CTXN1P60606 82 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 SUPT4H1P63272 117 aaKnown RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 JOSD1Q15040 202 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 PRRT2Q7Z6L0 340 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 LINC00346Q8IVM7 164 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 C1orf87Q8N0U7 546 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 CBARPQ8N350 705 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 TMEM229BQ8NBD8 167 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 RNF128Q8TEB7 428 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 MRPL24Q96A35 216 aaKnown RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 CASD1Q96PB1 797 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 GINS3Q9BRX5 216 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 ZNF2Q9BSG1 426 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 COMMD4Q9H0A8 199 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 ZNF703Q9H7S9 590 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 LPAR2Q9HBW0 351 aa6.46□□□□□ -1.38
LIMCH1-207ENST00000508466 FOXD3Q9UJU5 478 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms