RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CSF1P09603 554 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 HOXD11P31277 338 aaPredicted RBP16.53■□□□□ 0.24
USP39-202ENST00000409025 FOXG1P55316 489 aaPredicted RBP16.53■□□□□ 0.24
USP39-202ENST00000409025 GUCA2AQ02747 115 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 SSBP1Q04837 148 aaKnown RBP16.53■□□□□ 0.24
USP39-202ENST00000409025 UNC119Q13432 240 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 RSPO4Q2I0M5 234 aaPredicted RBP16.53■□□□□ 0.24
USP39-202ENST00000409025 TBRG1Q3YBR2 411 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 GLIPR1L1Q6UWM5 242 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 BTN2A1Q7KYR7 527 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 OR2W3Q7Z3T1 314 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 PNLDC1Q8NA58 520 aaKnown RBP16.53■□□□□ 0.24
USP39-202ENST00000409025 OR2AE1Q8NHA4 323 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 SSC4DQ8WTU2 575 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 RGCCQ9H4X1 137 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 C12orf49Q9H741 205 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 ZNF224Q9NZL3 707 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 KLK10O43240 276 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 GMDSO60547 372 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 SCGNO76038 276 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 OR3A4PP47883 348 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 PCGF3Q3KNV8 242 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 SFRP4Q6FHJ7 346 aaPredicted RBP16.53■□□□□ 0.24
USP39-202ENST00000409025 RNF144BQ7Z419 303 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 ACBD4Q8NC06 268 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 SCPEP1Q9HB40 452 aa16.53■□□□□ 0.24
USP39-202ENST00000409025 ZFHX2Q9C0A1 2572 aaPredicted RBP16.52■□□□□ 0.23
USP39-202ENST00000409025 TMEM14DPA8MWL7 114 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 AQP7O14520 342 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 UBBP0CG47 229 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 FAUP35544 74 aaKnown RBP16.52■□□□□ 0.23
USP39-202ENST00000409025 RIPPLY1Q0D2K3 151 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 UBE2V2Q15819 145 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 MOGAT2Q3SYC2 334 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 CPEB3Q8NE35 698 aaKnown RBP16.52■□□□□ 0.23
USP39-202ENST00000409025 GPX8Q8TED1 209 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 GMPPAQ96IJ6 420 aaPredicted RBP16.52■□□□□ 0.23
USP39-202ENST00000409025 ACTR6Q9GZN1 396 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 MCUBQ9NWR8 336 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 PRSS50Q9UI38 385 aa16.52■□□□□ 0.23
USP39-202ENST00000409025 RIF1Q5UIP0 2472 aaKnown RBP16.52■□□□□ 0.23
USP39-202ENST00000409025 LPLP06858 475 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 H2AFB2P0C5Z0 115 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 RAG2P55895 527 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 KISS1Q15726 138 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 KCNG3Q8TAE7 436 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 GLRX2Q9NS18 164 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 HLA-HP01893 362 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 COX5BP10606 129 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 PSMB1P20618 241 aaKnown RBP16.51■□□□□ 0.23
USP39-202ENST00000409025 ARR3P36575 388 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 ACTBP60709 375 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 ACTG1P63261 375 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 ZNF169Q14929 603 aaPredicted RBP16.51■□□□□ 0.23
USP39-202ENST00000409025 TMEM255AQ5JRV8 349 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 ATAD3CQ5T2N8 411 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 FBXW9Q5XUX1 488 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 OR56B4Q8NH76 319 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 NPRL2Q8WTW4 380 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 AKAP1Q92667 903 aaKnown RBP eCLIP16.51■□□□□ 0.23
USP39-202ENST00000409025 SEH1LQ96EE3 360 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 ST6GAL2Q96JF0 529 aa16.51■□□□□ 0.23
USP39-202ENST00000409025 FREM1Q5H8C1 2179 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 ARHGAP21Q5T5U3 1957 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 RAB27BO00194 218 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 XRCC2O43543 280 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 CD79AP11912 226 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 GSK3AP49840 483 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 TMEM53Q6P2H8 277 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 IGFL3Q6UXB1 125 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 FGD2Q7Z6J4 655 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 SARAFQ96BY9 339 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 NUDT16L1Q9BRJ7 211 aaKnown RBP16.5■□□□□ 0.23
USP39-202ENST00000409025 C1QTNF5Q9BXJ0 243 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 CLCF1Q9UBD9 225 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 GHRLQ9UBU3 117 aa16.5■□□□□ 0.23
USP39-202ENST00000409025 MEIS3P1A6NDR6 274 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 A8MV72 311 aaPredicted RBP16.49■□□□□ 0.23
USP39-202ENST00000409025 SS18L1O75177 396 aaPredicted RBP16.49■□□□□ 0.23
USP39-202ENST00000409025 GTF2F2P13984 249 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 ACKR3P25106 362 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 MPGP29372 298 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 OR3A2P47893 321 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 RRAS2P62070 204 aaPredicted RBP16.49■□□□□ 0.23
USP39-202ENST00000409025 FAM189A2Q15884 450 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 CHST4Q8NCG5 386 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 RNF170Q96K19 258 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 C1orf147Q96MC9 270 aaPredicted RBP16.49■□□□□ 0.23
USP39-202ENST00000409025 C20orf85Q9H1P6 137 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 NEK6Q9HC98 313 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 B3GNT2Q9NY97 397 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 KLK13Q9UKR3 277 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 A0A0A6YYJ9 748 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 MPIG6BO95866 241 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 CHRM2P08172 466 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 AKAIN1P0CW23 69 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 PTGFRP43088 359 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 VEGFCP49767 419 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 DMRTC1Q5HYR2 192 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 DPPA2Q7Z7J5 298 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms