RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 GABRA6Q16445 453 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ODF4Q2M2E3 257 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 DEFB113Q30KQ7 82 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 HSD17B13Q7Z5P4 300 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 VRK3Q8IV63 474 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 STHQ8IWL8 128 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 PDZD9Q8IXQ8 264 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 AMER3Q8N944 861 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SLCO4A1Q96BD0 722 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 KAZALD1Q96I82 304 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SSBP3Q9BWW4 388 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 IL21Q9HBE4 155 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 GALPQ9UBC7 116 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SLC25A10Q9UBX3 287 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 ZNF443Q9Y2A4 671 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 UFC1Q9Y3C8 167 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 COL6A6A6NMZ7 2263 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.64□□□□□ -1.83
USH2A-202ENST00000366942 NHSL1Q5SYE7 1610 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 A0A0D9SG52 128 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 TRBV2A0A0J9YWF9 115 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 CFDP00746 253 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 CSN2P05814 226 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 METTL15P1P0C7V9 234 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ARAFP10398 606 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 KLK2P20151 261 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 NME2P22392 152 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 NFYAP23511 347 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 HOXD11P31277 338 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 MARCKSL1P49006 195 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 PIGPP57054 158 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 UBE2MP61081 183 aaKnown RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 TBRG1Q3YBR2 411 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ZNF613Q6PF04 617 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 OGFOD3Q6PK18 319 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 MARCH9Q86YJ5 346 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 LINC00346Q8IVM7 164 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 CYB561A3Q8NBI2 242 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 RGP1Q92546 391 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 SNTG1Q9NSN8 517 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ASIC5Q9NY37 505 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 GSKIPQ9P0R6 139 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 HCSTQ9UBK5 93 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 PCTPQ9UKL6 214 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 TRAPPC4Q9Y296 219 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 MYO7AQ13402 2215 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 IGHV3OR16-12A0A075B7B8 117 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 FAM240BA0A1B0GVZ2 78 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 OR2AT4A6NND4 320 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 MPDU1O75352 247 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 AKR7A3O95154 331 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SCTP09683 121 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 EFNA1P20827 205 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 NMUP48645 174 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 CTU2Q2VPK5 515 aaKnown RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 SLC22A6Q4U2R8 563 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ZNF385BQ569K4 471 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 PHYHD1Q5SRE7 291 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ATPAF1Q5TC12 328 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 RNLSQ5VYX0 342 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 TMEM205Q6UW68 189 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 RTN4RL2Q86UN3 420 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 TMEM251Q8N6I4 163 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ARL11Q969Q4 196 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 EEF1AKMT3Q96AZ1 226 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SNRNP40Q96DI7 357 aaKnown RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 SDSLQ96GA7 329 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 MARS2Q96GW9 593 aaKnown RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 RHOFQ9HBH0 211 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SERTAD4Q9NUC0 356 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 LIN7CQ9NUP9 197 aaKnown RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 A0A087WV62 115 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 OR2T8A6NH00 312 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 PTP4A3O75365 173 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 CD14P08571 375 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 FGF2P09038 288 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 CLEC2LP0C7M8 214 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 MAKP20794 623 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 RPL13AP40429 203 aaKnown RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 GATA4P43694 442 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ZNF136P52737 540 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 FXYD4P59646 89 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 OR5I1Q13606 314 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SLC9A3R2Q15599 337 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 EMC4Q5J8M3 183 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 KLF17Q5JT82 389 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 TMEM81Q6P7N7 255 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 OVCH2Q7RTZ1 564 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 CMC1Q7Z7K0 106 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ZNF383Q8NA42 475 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 FNDC9Q8TBE3 224 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SCARB1Q8WTV0 552 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 NUDCD2Q8WVJ2 157 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 ZBTB9Q96C00 473 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 C12orf43Q96C57 262 aaKnown RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 COQ10AQ96MF6 247 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 KCTD7Q96MP8 289 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 SPOCK3Q9BQ16 436 aa3.64□□□□□ -1.83
USH2A-202ENST00000366942 NIPSNAP3BQ9BS92 247 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms