RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TMEM41AQ96HV5 264 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 GPER1Q99527 375 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 HPF1Q9NWY4 346 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 SLC39A1Q9NY26 324 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 AUP1Q9Y679 476 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 NPIPA2E9PIF3 369 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 NPIPA3F8WFD2 350 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 PMP2P02689 132 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 ERCC1P07992 297 aaPredicted RBP16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 GUCA1AP43080 201 aaPredicted RBP16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 CAPZA1P52907 286 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 ZNF239Q16600 458 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 DTX1Q86Y01 620 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 ZNF837Q96EG3 531 aaPredicted RBP16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 PGAM5Q96HS1 289 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 GUCD1Q96NT3 240 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 EDEM2Q9BV94 578 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 LPAR5Q9H1C0 372 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 KCNN3Q9UGI6 736 aa16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 NOP16Q9Y3C1 178 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-201ENST00000291842 IGKV1-9A0A0C4DH69 117 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 LOC102725191A0A1B0GVB3 256 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 DSCR4P56555 118 aaPredicted RBP16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 MC2RQ01718 297 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 IKZF1Q13422 519 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 CAMK2BQ13554 666 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 KCNMB1Q16558 191 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 CCDC157Q569K6 752 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 NHLRC3Q5JS37 347 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 CCDC28AQ8IWP9 274 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 MAML2Q8IZL2 1156 aaPredicted RBP16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 M1APQ8TC57 530 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 PAQR8Q8TEZ7 354 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 LYZL4Q96KX0 146 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 C1QTNF6Q9BXI9 259 aa16.17■□□□□ 0.18
SHKBP1-201ENST00000291842 A0A087WZY1 265 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 A0A0G2JMM0 328 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 A0A0J9YW62 118 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 A0A1W2PPB8 328 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 A0A1W2PRS3 328 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 KIR3DP1A8MWS1 328 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 YKT6O15498 198 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 CYC1P08574 325 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 MSR1P21757 451 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 MEF2DQ14814 521 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 PLAC9Q5JTB6 97 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 RHOUQ7L0Q8 258 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 SEC22AQ96IW7 307 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 C1orf147Q96MC9 270 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 CST11Q9H112 138 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 OR2AT4A6NND4 320 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 HMSDA8MTL9 139 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 CRTAPO75718 401 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 PDGFAP04085 211 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 DBHP09172 617 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 CD34P28906 385 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 FOLR3P41439 243 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 ENDOGQ14249 297 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 MPPED2Q15777 294 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 LRRC37A5PQ49AS3 106 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 COQ8AQ8NI60 647 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 PRRT1Q99946 306 aa16.16■□□□□ 0.18
SHKBP1-201ENST00000291842 TRAV14DV4A0A0A6YYC5 116 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 CDC14BO60729 498 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 RP2O75695 350 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 STK17BO94768 372 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 CD63P08962 238 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 FKBP2P26885 142 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 GRB2P62993 217 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 PPP1R1AQ13522 171 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 PGAP1Q75T13 922 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 DOK3Q7L591 496 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 ADAD2Q8NCV1 583 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 OR9K2Q8NGE7 335 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 ANGPTL6Q8NI99 470 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 SRXN1Q9BYN0 137 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 MFFQ9GZY8 342 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 NELFAQ9H3P2 528 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 ZNF107Q9UII5 783 aaPredicted RBP16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 SCO1O75880 301 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 OTX2P32243 289 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 CASRP41180 1078 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 DUSP3P51452 185 aaPredicted RBP16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 MLF1P58340 268 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 GMFBP60983 142 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 YRDCQ86U90 279 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 BEST3Q8N1M1 668 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 OR14K1Q8NGZ2 314 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 MYO7BQ6PIF6 2116 aa16.15■□□□□ 0.18
SHKBP1-201ENST00000291842 PMS2P1A4D2B8 440 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 OR6C65A6NJZ3 312 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 TEX46H3BTG2 121 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 CER1O95813 267 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 CRYZL1O95825 349 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 F10P00742 488 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 RRASP10301 218 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 AKR1C4P17516 323 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 AANATQ16613 207 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 C1QL2Q7Z5L3 287 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 CASTOR1Q8WTX7 329 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms