RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 OR52H1Q8NGJ2 320 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 OR5L2Q8NGL0 311 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 LRRC46Q96FV0 321 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 FN3KRPQ9HA64 309 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 IGLV3-12A0A075B6K2 115 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 TSPAN9O75954 239 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 GP1BAP07359 652 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 GSTP1P09211 210 aaKnown RBP16.58■□□□□ 0.25
CPSF3-201ENST00000238112 BCKDHBP21953 392 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 PSMB6P28072 239 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 MC2RQ01718 297 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 SMAD2Q15796 467 aaKnown RBP16.58■□□□□ 0.25
CPSF3-201ENST00000238112 PGAP1Q75T13 922 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 KCNG3Q8TAE7 436 aa16.58■□□□□ 0.25
CPSF3-201ENST00000238112 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 ATP6V1G2-DDX39BF2Z307 99 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 TOR1AO14656 332 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 CRHP06850 196 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 HCKP08631 526 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 SERPINF1P36955 418 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF121P58317 390 aaPredicted RBP16.58■□□□□ 0.24
CPSF3-201ENST00000238112 SLC25A53Q5H9E4 307 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 FAM69BQ5VUD6 431 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 UNQ6126/PRO20091Q6UXV3 157 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 RNF144BQ7Z419 303 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 ARMC10Q8N2F6 343 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 TMEM104Q8NE00 496 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 BPIFCQ8NFQ6 507 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 OR4K17Q8NGC6 315 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 OR8B12Q8NGG6 310 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 OR2I1PQ8NGU4 316 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 TERB2Q8NHR7 220 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 FAM71F1Q96KD3 344 aaPredicted RBP16.58■□□□□ 0.24
CPSF3-201ENST00000238112 TMEM59Q9BXS4 323 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 PIGMQ9H3S5 423 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 GPR84Q9NQS5 396 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 ASH2LQ9UBL3 628 aa16.58■□□□□ 0.24
CPSF3-201ENST00000238112 A0A0A6YYD4 124 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 CDC14BO60729 498 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 HIST1H1DP16402 221 aaKnown RBP16.57■□□□□ 0.24
CPSF3-201ENST00000238112 OR3A4PP47883 348 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 MICBQ29980 383 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 ACTBL2Q562R1 376 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 OR5AS1Q8N127 324 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 SLC38A9Q8NBW4 561 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 ADPRHL1Q8NDY3 354 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 POC1BQ8TC44 478 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 DCUN1D4Q92564 292 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 OR5B2Q96R09 309 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 AIFM2Q9BRQ8 373 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 CSAG2Q9Y5P2 127 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 WIF1Q9Y5W5 379 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 DBX1A6NMT0 343 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 SIGLEC5O15389 551 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 SOCS1O15524 211 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 CYCSP99999 105 aaKnown RBP16.57■□□□□ 0.24
CPSF3-201ENST00000238112 SIGLEC14Q08ET2 396 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 MFAP5Q13361 173 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 GFOD2Q3B7J2 385 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 TMEM128Q5BJH2 165 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 NAA40Q86UY6 237 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 RNF138Q8WVD3 245 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 GPER1Q99527 375 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 SOX7Q9BT81 388 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 BANF2Q9H503 90 aa16.57■□□□□ 0.24
CPSF3-201ENST00000238112 A0A1W2PNR3 127 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 PGAM2P15259 253 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 CX3CR1P49238 355 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 FAM189A2Q15884 450 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 PLAC9Q5JTB6 97 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 ARRDC1Q8N5I2 433 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 OR10G3Q8NGC4 313 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 NMES1Q9C002 83 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 MTCH2Q9Y6C9 303 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 LAMA1P25391 3075 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 RER1O15258 196 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 KCNAB3O43448 404 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 TRAF3IP2O43734 574 aaPredicted RBP16.56■□□□□ 0.24
CPSF3-201ENST00000238112 CRTAPO75718 401 aaPredicted RBP16.56■□□□□ 0.24
CPSF3-201ENST00000238112 AFF3P51826 1226 aaKnown RBP16.56■□□□□ 0.24
CPSF3-201ENST00000238112 ACY1Q03154 408 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 SMAD4Q13485 552 aaKnown RBP16.56■□□□□ 0.24
CPSF3-201ENST00000238112 COL19A1Q14993 1142 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 VAX1Q5SQQ9 334 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 MARC2Q969Z3 335 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF576Q9H609 170 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 ASF1BQ9NVP2 202 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 PCDHB10Q9UN67 800 aa16.56■□□□□ 0.24
CPSF3-201ENST00000238112 EXPH5Q8NEV8 1989 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 NPY4RP50391 375 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 P2RY4P51582 365 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 SLC25A47Q6Q0C1 308 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 UQCC3Q6UW78 93 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 TMPRSS9Q7Z410 1059 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF283Q8N7M2 679 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 BOLLQ8N9W6 283 aaKnown RBP16.55■□□□□ 0.24
CPSF3-201ENST00000238112 OR5AP2Q8NGF4 316 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 OR56B1Q8NGI3 324 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 OR6X1Q8NH79 312 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 PIK3IP1Q96FE7 263 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms