RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ECDO95905 644 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 EFNB2P52799 333 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 HIST1H3AP68431 136 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 KLRD1Q13241 179 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 KRR1Q13601 381 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 ANKDD1AQ495B1 522 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 LRRC23Q53EV4 343 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 CYBRD1Q53TN4 286 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 HIST2H3PS2Q5TEC6 136 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 HIST2H3AQ71DI3 136 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 PGAP1Q75T13 922 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 CFHR4Q92496 578 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 TSSK2Q96PF2 358 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 HDHD2Q9H0R4 259 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 NMNAT1Q9HAN9 279 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 SNX13Q9Y5W8 968 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 NPFFO15130 113 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 LCATP04180 440 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 GRPP07492 148 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 ACSM4P0C7M7 580 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 EEF1B2P24534 225 aaKnown RBP16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 KCNMB1Q16558 191 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 NSUN5P1Q3KNT7 163 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 ZBED5Q49AG3 693 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 C11orf87Q6NUJ2 197 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 PTCHD4Q6ZW05 846 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 CALHM3Q86XJ0 350 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 GCSAMQ8N6F7 178 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 KLHDC1Q8N7A1 406 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 NPRL2Q8WTW4 380 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 ADAT1Q9BUB4 502 aaKnown RBP16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 FNDC11Q9BVV2 318 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 TRIM36Q9NQ86 728 aa16.65■□□□□ 0.26
SQSTM1-215ENST00000514093 MEIOCA2RUB1 952 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 SOCS2O14508 198 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 PAHP00439 452 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 IFNA8P32881 189 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 MALLQ13021 153 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 TRAM2Q15035 370 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 LY6EQ16553 131 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 ZNF730Q6ZMV8 503 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 LINC00346Q8IVM7 164 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 OR5R1Q8NH85 324 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 CCL13Q99616 98 aa16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 VSX1Q9NZR4 365 aaPredicted RBP16.64■□□□□ 0.25
SQSTM1-215ENST00000514093 A0A087WUU8 490 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 hCG_1807616A0A1W2PRN6 198 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 A6NLC8 198 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 CD300LBA8K4G0 201 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 H3BUX3 64 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 DCTN6O00399 190 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 FFAR1O14842 300 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 PTBP3O95758 552 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 IFNA14P01570 189 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 SAA4P35542 130 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 KRTAP27-1Q3LI81 207 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 CFAP77Q6ZQR2 320 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 MRPL21Q7Z2W9 205 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 Q8N7P7 452 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 LY6G5BQ8NDX9 201 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 PHF21AQ96BD5 680 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 TLCD1Q96CP7 247 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 ADA2Q9NZK5 511 aa16.63■□□□□ 0.25
SQSTM1-215ENST00000514093 VSIG10L2P0DP72 767 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 SDHAP31040 664 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 KDELR2P33947 212 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 CDKN2AP42771 156 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 KIR2DS4P43632 304 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 METAP1DQ6UB28 335 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 MBOAT2Q6ZWT7 520 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 OFCC1Q8IZS5 231 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 FAM156AQ8NDB6 213 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 ACOT11Q8WXI4 607 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 PITX2Q99697 317 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 KAAG1Q9UBP8 84 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 IER3IP1Q9Y5U9 82 aa16.62■□□□□ 0.25
SQSTM1-215ENST00000514093 XPNPEP2O43895 674 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 GMDSO60547 372 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 MPIG6BO95866 241 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 LHBP01229 141 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 ANOS1P23352 680 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 GUCA2AQ02747 115 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 CYLC2Q14093 348 aaPredicted RBP16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 TEX36Q5VZQ5 186 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 TMPRSS11FQ6ZWK6 438 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 RNF113BQ8IZP6 322 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 CMTM4Q8IZR5 234 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 LNX2Q8N448 690 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 FAM216BQ8N7L0 139 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 OR2AE1Q8NHA4 323 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 C17orf50Q8WW18 174 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 SLC22A4Q9H015 551 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 MMP28Q9H239 520 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 NRIP3Q9NQ35 241 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 AURKCQ9UQB9 309 aa16.61■□□□□ 0.25
SQSTM1-215ENST00000514093 GGT3PA6NGU5 568 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 PPP1R3DO95685 299 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 GGT2P36268 569 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 MDH1P40925 334 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 SELENOWP63302 87 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms