RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 F5H5P2 479 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 M0R135 149 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 MLNRO43193 412 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ENSAO43768 121 aaKnown RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 DCTN3O75935 186 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 DIRAS1O95057 198 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ECDO95905 644 aaPredicted RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 CYB5R3P00387 301 aaPredicted RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 PLATP00750 562 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 IFNGP01579 166 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 CRYBA1P05813 215 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 HOXB6P17509 224 aaKnown RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 CFL1P23528 166 aaKnown RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 FMO3P31513 532 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 FXYD6P3P58550 94 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 RPL15P61313 204 aaKnown RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 MXRA7P84157 204 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS41-208ENST00000448833 GK3PQ14409 553 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 RSPO1Q2MKA7 263 aaPredicted RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 KRTAP27-1Q3LI81 207 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 SPRNQ5BIV9 151 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 PRR31Q5SQ13 230 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 CORO6Q6QEF8 472 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 ZDHHC21Q8IVQ6 265 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ARHGAP24Q8N264 748 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 FTMTQ8N4E7 242 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 PROKR2Q8NFJ6 384 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 OR10AD1Q8NGE0 317 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 OR4K13Q8NH42 304 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ZNF420Q8TAQ5 688 aaPredicted RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 ITFG2Q969R8 447 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 SLCO4A1Q96BD0 722 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ZNF799Q96GE5 643 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 FAM71F1Q96KD3 344 aaPredicted RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 TSSK2Q96PF2 358 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 CDRT15Q96T59 188 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 NUDT16L1Q9BRJ7 211 aaKnown RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 SLITRK2Q9H156 845 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 MUC13Q9H3R2 512 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 TOR3AQ9H497 397 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ESM1Q9NQ30 184 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ZNF446Q9NWS9 450 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 IL20Q9NYY1 176 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 MRPL15Q9P015 296 aaKnown RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 GMPR2Q9P2T1 348 aaKnown RBP5.92□□□□□ -1.46
VPS41-208ENST00000448833 PKD1L1Q8TDX9 2849 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 ANKRD30BLA7E2S9 258 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 CD300LBA8K4G0 201 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 H0YL77 283 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 TNFRSF11BO00300 401 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 P2RY10O00398 339 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 DCTN6O00399 190 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 BHLHE40O14503 412 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 XRCC2O43543 280 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 SNX3O60493 162 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 TIPRLO75663 272 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 SEMG1P04279 462 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 HLA-DPB1P04440 258 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 EGR1P18146 543 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 PSMB10P40306 273 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 SEC61A1P61619 476 aaKnown RBP5.91□□□□□ -1.46
VPS41-208ENST00000448833 GRB2P62993 217 aaKnown RBP5.91□□□□□ -1.46
VPS41-208ENST00000448833 RELBQ01201 579 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 PAX2Q02962 417 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 PDCD1Q15116 288 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 MEP1BQ16820 701 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 KLF17Q5JT82 389 aaPredicted RBP5.91□□□□□ -1.46
VPS41-208ENST00000448833 TEX30Q5JUR7 227 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 METTL11BQ5VVY1 283 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 WDR25Q64LD2 544 aaPredicted RBP5.91□□□□□ -1.46
VPS41-208ENST00000448833 C16orf87Q6PH81 154 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 TREML4Q6UXN2 200 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 ZNF620Q6ZNG0 422 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 CFAP77Q6ZQR2 320 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 RASSF6Q6ZTQ3 369 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 LINC00346Q8IVM7 164 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 TMEM86BQ8N661 226 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 RNF148Q8N7C7 305 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 SDR9C7Q8NEX9 313 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 OR52H1Q8NGJ2 320 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 KCNJ15Q99712 375 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 PRDM13Q9H4Q3 707 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 MAGIXQ9H6Y5 334 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 WDR76Q9H967 626 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 ABCB9Q9NP78 766 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 DCAF16Q9NXF7 216 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 ACTR3BQ9P1U1 418 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 TAGLN3Q9UI15 199 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 ARL2BPQ9Y2Y0 163 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 CAB39Q9Y376 341 aaPredicted RBP5.91□□□□□ -1.46
VPS41-208ENST00000448833 PCDHGB1Q9Y5G3 927 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 POMT1Q9Y6A1 747 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 CDH10Q9Y6N8 788 aa5.91□□□□□ -1.46
VPS41-208ENST00000448833 OOEPA6NGQ2 149 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 RIIAD1A6NNX1 92 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 SRRM5B3KS81 715 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 ZNF878C9JN71 531 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 LGALS8O00214 317 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms