RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PARD6AQ9NPB6 346 aa8.23□□□□□ -1.09
LIMCH1-202ENST00000381753 ZFP57Q9NU63 452 aa8.23□□□□□ -1.09
LIMCH1-202ENST00000381753 FBXL17Q9UF56 701 aa8.23□□□□□ -1.09
LIMCH1-202ENST00000381753 RBMX2Q9Y388 322 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-202ENST00000381753 UBR3Q6ZT12 1888 aa8.23□□□□□ -1.09
LIMCH1-202ENST00000381753 TCRBV4S1A1TA0A5B7 111 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 A8MV72 311 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MS4A18H0YCH9 400 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ETHE1O95571 254 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 VEGFCP49767 419 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 SSTP61278 116 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MS4A18Q3C1V0 323 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 NHLRC1Q6VVB1 395 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ADGRG5Q8IZF4 528 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ADAMTS17Q8TE56 1095 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 SLAMF9Q96A28 289 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 TSNAXQ99598 290 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 PLEKHF2Q9H8W4 249 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MN1Q10571 1320 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MEX3AA1L020 520 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 SOCS6O14544 535 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 USF1P22415 310 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 PRDX4Q13162 271 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 HABP2Q14520 560 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ATXN7L3Q14CW9 347 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MEP1BQ16820 701 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 LIPKQ5VXJ0 399 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ACSM6Q6P461 480 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 OR4M1Q8NGD0 313 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 CANT1Q8WVQ1 401 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 SEC22AQ96IW7 307 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 EGLN2Q96KS0 407 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 NPFFR1Q9GZQ6 430 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 IKZF5Q9H5V7 419 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 RABL2AQ9UBK7 228 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 A6NIN4 97 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ZFP92A6NM28 416 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 K7ENP7 123 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 FBP1P09467 338 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 THBS4P35443 961 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 VDAC2P45880 294 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 TBRG1Q3YBR2 411 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 BPIFCQ8NFQ6 507 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 OR2AE1Q8NHA4 323 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 PTP4A1Q93096 173 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 GALMQ96C23 342 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ASB9Q96DX5 294 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MISP3Q96FF7 219 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 DDX31Q9H8H2 851 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 SLC25A10Q9UBX3 287 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 C17orf112F2Z3M2 114 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 SLC22A1O15245 554 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 HTN3P15516 51 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ID1P41134 155 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF133P52736 654 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 TAS2R20P59543 309 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 PGGHGQ32M88 737 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MFSD4AQ8N468 514 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 KCNG3Q8TAE7 436 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 OR51E1Q8TCB6 317 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 PELI1Q96FA3 418 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 LMX1BO60663 402 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 RAB3BP20337 219 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MAKP20794 623 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF93P35789 620 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 TNXAQ16473 311 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 MBOAT2Q6ZWT7 520 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 GTSCR1Q86UQ5 136 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 CCDC28AQ8IWP9 274 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 RPS4Y2Q8TD47 263 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 NEURL3Q96EH8 262 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 P2RX4Q99571 388 aa8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 RANBP3Q9H6Z4 567 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-202ENST00000381753 CASP3P42574 277 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 TAS2R46P59540 309 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 UBE2IP63279 158 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 ETFDHQ16134 617 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 YIF1BQ5BJH7 314 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 SNX22Q96L94 193 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 NTNG1Q9Y2I2 539 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 DLG5Q8TDM6 1919 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 OR5H8P0DN80 308 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 LUMP51884 338 aaPredicted RBP8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 SLC35A2P78381 396 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 LSM11P83369 360 aaKnown RBP eCLIP8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 SHEQ5VZ18 495 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 Q6ZRG5 221 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 SLC25A26Q70HW3 274 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 OR9Q2Q8NGE9 314 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF596Q8TC21 504 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 MAFIPQ8WZ33 124 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 MUL1Q969V5 352 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 SSX3Q99909 188 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 JAM3Q9BX67 310 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 KCNG2Q9UJ96 466 aa8.21□□□□□ -1.09
LIMCH1-202ENST00000381753 ADAMTS7Q9UKP4 1686 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 SDHDO14521 159 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 HPRP00739 348 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms