RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 KLF13Q9Y2Y9 288 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ACANP16112 2415 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 PCNX1Q96RV3 2341 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 NCOA6Q14686 2063 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 PCM1Q15154 2024 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 HRNRQ86YZ3 2850 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 BIRC6Q9NR09 4857 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SPG11Q96JI7 2443 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 AKAP6Q13023 2319 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 DOCK10Q96BY6 2186 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 NPIPA5A0A0B4J1W7 369 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 KLRC4-KLRK1H3BQV0 150 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CLOCKO15516 846 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 TAPBPO15533 448 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ZBTB14O43829 449 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SMPD2O60906 423 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 EEDO75530 441 aaKnown RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 LY6HO94772 140 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 TGM6O95932 706 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 KRT14P02533 472 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CLPSP04118 112 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 P04436 131 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CT62P0C5K7 136 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 MPC1LP0DKB6 136 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RNH1P13489 461 aaKnown RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ICAM2P13598 275 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CPMP14384 443 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 TSPAN8P19075 237 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 OGNP20774 298 aaKnown RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CYLC1P35663 651 aaPredicted RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 FDFT1P37268 417 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RFX3P48380 749 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 LIM2P55344 173 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RAB38P57729 211 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 PLOD1Q02809 727 aaPredicted RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RGS1Q08116 209 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 STX4Q12846 297 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 STX5Q13190 355 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 FAM53BQ14153 422 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 TSNQ15631 228 aaKnown RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SLC25A35Q3KQZ1 300 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 TTLL9Q3SXZ7 439 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 GLYR1Q49A26 553 aaPredicted RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 PAGE2BQ5JRK9 111 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF691Q5VV52 312 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 PRAMEF7Q5VXH5 474 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SBSNQ6UWP8 590 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ANGPTL8Q6UXH0 198 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 HSDL2Q6YN16 418 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RTL4Q6ZR62 310 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 FRA10AC1Q70Z53 315 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RPS27LQ71UM5 84 aaKnown RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ABHD13Q7L211 337 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 GALNT10Q86SR1 603 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 LINC00523Q86TU6 105 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 THOC6Q86W42 341 aaKnown RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CNEP1R1Q8N9A8 125 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 PLPP5Q8NEB5 264 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 FBXO30Q8TB52 745 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ANKRD49Q8WVL7 239 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 DLX4Q92988 240 aaPredicted RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RNASE6Q93091 150 aaKnown RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ATP6V1E2Q96A05 226 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 LRRC45Q96CN5 670 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 MS4A6EQ96DS6 147 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SLC25A38Q96DW6 304 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 TM4SF19Q96DZ7 209 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 VMP1Q96GC9 406 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SNF8Q96H20 258 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 RILPQ96NA2 401 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 WFIKKN1Q96NZ8 548 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SERPINB12Q96P63 405 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 HBEGFQ99075 208 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 KLHDC3Q9BQ90 382 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CCDC77Q9BR77 488 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ANP32EQ9BTT0 268 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 DOHHQ9BU89 302 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 KIFC1Q9BW19 673 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 UGT2B28Q9BY64 529 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 OR51B5Q9H339 312 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 TMEM185BQ9H7F4 350 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 ZDHHC11Q9H8X9 412 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 LZTFL1Q9NQ48 299 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 MEPEQ9NQ76 525 aaPredicted RBP2.02□□□□□ -2.09
SCFD1-219ENST00000556413 FAM114A2Q9NRY5 505 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 BFARQ9NZS9 450 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 DPM3Q9P2X0 92 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 MIOXQ9UGB7 285 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 FBXO5Q9UKT4 447 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 DHRS7Q9Y394 339 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SNX5Q9Y5X3 404 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CLCA3PQ9Y6N3 262 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CPAMD8Q8IZJ3 1885 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SVEP1Q4LDE5 3571 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 CACNA1CQ13936 2221 aa2.02□□□□□ -2.09
SCFD1-219ENST00000556413 SCN3AQ9NY46 2000 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 A0A1W2PRV1 198 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 DEFB108AA8MXU0 73 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 SUPT3HB4E1H0 165 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms