RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FAHD2AQ96GK7 314 aa11.52□□□□□ -0.57
SFSWAP-209ENST00000540469 SMIM8Q96KF7 97 aa11.52□□□□□ -0.57
SFSWAP-209ENST00000540469 TBC1D29Q9UFV1 150 aa11.52□□□□□ -0.57
SFSWAP-209ENST00000540469 RAB22AQ9UL26 194 aa11.52□□□□□ -0.57
SFSWAP-209ENST00000540469 PUS1Q9Y606 427 aaKnown RBP eCLIP11.52□□□□□ -0.57
SFSWAP-209ENST00000540469 A0A0A6YYH2 397 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 A6NJ64 397 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 ZNF729A6NN14 1252 aaPredicted RBP11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 K7EPK0 472 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 MOSPD3O75425 235 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 CAMLGP49069 296 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 ADPRHP54922 357 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 EEF1A1P5Q5VTE0 462 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 PPP1R3BQ86XI6 285 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 FAM71E2Q8N5Q1 922 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 RSPRY1Q96DX4 576 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 LMF2Q9BU23 707 aaKnown RBP11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 LYRM4Q9HD34 91 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 LSM5Q9Y4Y9 91 aaKnown RBP11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 H7C1Q1 480 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 TIMP1P01033 207 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 OR13C7P0DN81 318 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 NDUFB7P17568 137 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 CEBPBP17676 345 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 GDI1P31150 447 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 SSTP61278 116 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 DEFB110Q30KQ9 67 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 C14orf28Q4W4Y0 310 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 MIDNQ504T8 468 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 ACTBL2Q562R1 376 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 AKR7LQ8NHP1 331 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 GPX7Q96SL4 187 aaPredicted RBP11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 ZBP1Q9H171 429 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 PDE7BQ9NP56 450 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 WBP1LQ9NX94 342 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 SLC2A8Q9NY64 477 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 ZNF107Q9UII5 783 aaPredicted RBP11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 DMRT1Q9Y5R6 373 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 IGKV1D-42A0A075B6H8 117 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 P2RY10O00398 339 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 ZNF354AO60765 605 aaPredicted RBP11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 ZP2Q05996 745 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 PDZD11Q5EBL8 140 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 LILRA6Q6PI73 481 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 CLEC18BQ6UXF7 455 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 OR9K2Q8NGE7 335 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 TERB2Q8NHR7 220 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 LRRC3BQ96PB8 259 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 PIGQQ9BRB3 760 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 HDAC8Q9BY41 377 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 FBXO7Q9Y3I1 522 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 FLVCR1Q9Y5Y0 555 aa11.51□□□□□ -0.57
SFSWAP-209ENST00000540469 NUDT21O43809 227 aaKnown RBP11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 FGF19O95750 216 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 ZNF823P16415 610 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 CXCR1P25024 350 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 SULT1A1P50225 295 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 EMP2P54851 167 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 ERV3-1Q14264 604 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 GUK1Q16774 197 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 PEG10Q86TG7 708 aaKnown RBP11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 ZNF383Q8NA42 475 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 OR10H5Q8NGA6 315 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 OR9A4Q8NGU2 314 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 SLAMF9Q96A28 289 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 KIR3DX1Q9H7L2 352 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 GFOD1Q9NXC2 390 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 LRP12Q9Y561 859 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 HIDE1A8MVS5 230 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 LMX1BO60663 402 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 EML2O95834 649 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 MPIG6BO95866 241 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 CSTBP04080 98 aaKnown RBP11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 CSNK1EP49674 416 aaKnown RBP11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 MGAT2Q10469 447 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 ZNF260Q3ZCT1 412 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 ASPHD2Q6ICH7 369 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 MFSD8Q8NHS3 518 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 SLC39A7Q92504 469 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 FAM3CQ92520 227 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 FGGYQ96C11 551 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 CNTD2Q9H8S5 307 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 FGF22Q9HCT0 170 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 SERGEFQ9UGK8 458 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 MMP24Q9Y5R2 645 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 FREM3P0C091 2139 aa11.5□□□□□ -0.57
SFSWAP-209ENST00000540469 TMEM269A0A1B0GVZ9 245 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 STMND1H3BQB6 276 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 RAB27BO00194 218 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 SCDO00767 359 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 CD5P06127 495 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 SLC35E2P0CK97 266 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 AMY2BP19961 511 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 CST6Q15828 149 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 ZNF674Q2M3X9 581 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 PHF19Q5T6S3 580 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 FAM166AQ6J272 317 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 CBLN3Q6UW01 205 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 OR5H2Q8NGV7 314 aa11.49□□□□□ -0.57
SFSWAP-209ENST00000540469 OR10C1Q96KK4 312 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms