RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GIFP27352 417 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 MPV17P39210 176 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 RPS27P42677 84 aaKnown RBP10.13□□□□□ -0.79
VPS52-213ENST00000461743 ZNF81P51508 661 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 MMP15P51511 669 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 EFNB1P98172 346 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 DBPQ10586 325 aaPredicted RBP10.13□□□□□ -0.79
VPS52-213ENST00000461743 MALLQ13021 153 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 APOFQ13790 326 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 EIF2B1Q14232 305 aaKnown RBP10.13□□□□□ -0.79
VPS52-213ENST00000461743 MAD2L1BPQ15013 274 aaPredicted RBP10.13□□□□□ -0.79
VPS52-213ENST00000461743 KLHL12Q53G59 568 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 SLC16A9Q7RTY1 509 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 ZNF786Q8N393 782 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 OR8J1Q8NGP2 316 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 UBASH3BQ8TF42 649 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 PPP1R14BQ96C90 147 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 ZMYND19Q96E35 227 aaPredicted RBP10.13□□□□□ -0.79
VPS52-213ENST00000461743 CNN2Q99439 309 aaKnown RBP10.13□□□□□ -0.79
VPS52-213ENST00000461743 MNTQ99583 582 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 TPK1Q9H3S4 243 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 RIBC2Q9H4K1 309 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 NIPAL2Q9H841 368 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 PURGQ9UJV8 347 aaKnown RBP10.13□□□□□ -0.79
VPS52-213ENST00000461743 TMEM14AQ9Y6G1 99 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 CSPG4Q6UVK1 2322 aa10.13□□□□□ -0.79
VPS52-213ENST00000461743 HIVEP2P31629 2446 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 IGHV4-30-2A0A087WSY4 118 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 CCDC182A6NF36 153 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 VWC2LB2RUY7 222 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 F5H5K5 113 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 PHYHO14832 338 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 NAT2P11245 290 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 ACHEP22303 614 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 HSD11B1P28845 292 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 EPHA2P29317 976 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 OPRL1P41146 370 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 SLC6A9P48067 706 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 LOXL1Q08397 574 aaPredicted RBP10.12□□□□□ -0.79
VPS52-213ENST00000461743 POU4F2Q12837 409 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 PSG7Q13046 419 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 TMED1Q13445 227 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 TAF13Q15543 124 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 RSPO1Q2MKA7 263 aaPredicted RBP10.12□□□□□ -0.79
VPS52-213ENST00000461743 AADACL4Q5VUY2 407 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 CBR4Q8N4T8 237 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 TCEANCQ8N8B7 351 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 BBS1Q8NFJ9 593 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 TRUB1Q8WWH5 349 aaKnown RBP10.12□□□□□ -0.79
VPS52-213ENST00000461743 RDH5Q92781 318 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 HAVCR1Q96D42 359 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 HRASLS5Q96KN8 279 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 RDH12Q96NR8 316 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 TEAD3Q99594 435 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 ABHD6Q9BV23 337 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 REG4Q9BYZ8 158 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 POFUT1Q9H488 388 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 CHODLQ9H9P2 273 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 HAO2Q9NYQ3 351 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 STARD10Q9Y365 291 aa10.12□□□□□ -0.79
VPS52-213ENST00000461743 NOP16Q9Y3C1 178 aaKnown RBP10.12□□□□□ -0.79
VPS52-213ENST00000461743 MALRD1Q5VYJ5 2156 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 A0A096LNT2 108 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 IQCF6A8MYZ5 107 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 E9PQ18 207 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 XRCC2O43543 280 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 TLX2O43763 284 aaPredicted RBP10.11□□□□□ -0.79
VPS52-213ENST00000461743 SELENOFO60613 162 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 NCR1O76036 304 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 LCATP04180 440 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 TNFSF4P23510 183 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 NR4A2P43354 598 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 TMEM255AQ5JRV8 349 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 KCTD18Q6PI47 426 aaPredicted RBP10.11□□□□□ -0.79
VPS52-213ENST00000461743 DEGS2Q6QHC5 323 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 ZBTB49Q6ZSB9 765 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 MEPCEQ7L2J0 689 aaKnown RBP10.11□□□□□ -0.79
VPS52-213ENST00000461743 ZCCHC24Q8N2G6 241 aaKnown RBP10.11□□□□□ -0.79
VPS52-213ENST00000461743 OR52H1Q8NGJ2 320 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 ASB17Q8WXJ9 295 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 RFKQ969G6 155 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 EME1Q96AY2 570 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 ELMOD3Q96FG2 381 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 EGLN1Q9GZT9 426 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 SAP30LQ9HAJ7 183 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 IMPAD1Q9NX62 359 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 PTTG3PQ9NZH4 202 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 H2AFY2Q9P0M6 372 aaPredicted RBP10.11□□□□□ -0.79
VPS52-213ENST00000461743 WARS2Q9UGM6 360 aaKnown RBP10.11□□□□□ -0.79
VPS52-213ENST00000461743 LAMP5Q9UJQ1 280 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 NIPBLQ6KC79 2804 aaeCLIP10.11□□□□□ -0.79
VPS52-213ENST00000461743 C2CD3Q4AC94 2353 aa10.11□□□□□ -0.79
VPS52-213ENST00000461743 SETD2Q9BYW2 2564 aaPredicted RBP10.11□□□□□ -0.79
VPS52-213ENST00000461743 DOCK11Q5JSL3 2073 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 ZFHX3Q15911 3703 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 A0A1B0GVG6 124 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 A0A1B0GWJ7 208 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 ZSCAN5BA6NJL1 495 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 RNF223E7ERA6 249 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 LY6HO94772 140 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms