RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SLC38A4Q969I6 547 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZBTB8AQ96BR9 441 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 RNF183Q96D59 192 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MS4A6EQ96DS6 147 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 WDR34Q96EX3 536 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 COL21A1Q96P44 957 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 TRNT1Q96Q11 434 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 PFDN5Q99471 154 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MAPKAP1Q9BPZ7 522 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 KCNS3Q9BQ31 491 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MARVELD1Q9BSK0 173 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ERVK-6Q9BXR3 956 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MS4A8Q9BY19 250 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 GEMIN7Q9H840 131 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 NT5DC2Q9H857 520 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 WDR54Q9H977 334 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF160Q9HCG1 818 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CCNB1IP1Q9NPC3 277 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SPAG4Q9NPE6 437 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 HINT3Q9NQE9 182 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF71Q9NQZ8 489 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 USE1Q9NZ43 259 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 WARS2Q9UGM6 360 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 C3orf18Q9UK00 162 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF225Q9UK10 706 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 FBXL4Q9UKA2 621 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 STUB1Q9UNE7 303 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SSR3Q9UNL2 185 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ING4Q9UNL4 249 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 B3GALT5Q9Y2C3 310 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 FIS1Q9Y3D6 152 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 HS3ST3B1Q9Y662 390 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CFAP46Q8IYW2 2715 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 IGLV3-12A0A075B6K2 115 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 TRAV26-1A0A087WT03 109 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 TRAV25A0A0B4J276 109 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 A0A1B0GVI7 797 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 C7orf66A4D0T2 115 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 METTL21EPA6NDL7 271 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 CXorf65A6NEN9 183 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 FAM74A7A6NL05 159 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 NPIPB8E9PQR5 432 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PPIAL4DF5H284 164 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 M0QZ24 198 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PLPP1O14494 284 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SDHDO14521 159 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 UBFD1O14562 309 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MYL12BO14950 172 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ARPC3O15145 178 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 DPM1O60762 260 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 EEDO75530 441 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MED6O75586 246 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 C1QL1O75973 258 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 GADD45GO95257 159 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SYNGR4O95473 234 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 CLDN9O95484 217 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MPC2O95563 127 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PDYNP01213 254 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 IGHV2-5P01817 119 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SFTPBP07988 381 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 NMBP08949 121 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SMIM10L1P0DMW3 83 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 TFPIP10646 304 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 COX6A1P12074 109 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 DAOP14920 347 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MYL12AP19105 171 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 UQCRC2P22695 453 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MMP11P24347 488 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 TACR3P29371 465 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PPP2R1BP30154 601 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ARRB2P32121 409 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 GDNFP39905 211 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 GPR4P46093 362 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 HTR5AP47898 357 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 GNG10P50151 68 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 NUDT2P50583 147 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 CCR4P51679 360 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 EMP2P54851 167 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 FOXA1P55317 472 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SEC61GP60059 68 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ISL1P61371 349 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 STXBP1P61764 594 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SNRPD2P62316 118 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ERVK-25P63136 954 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SLC35A2P78381 396 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 BTG2P78543 158 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 HMGCS1Q01581 520 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ID2Q02363 134 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 NHLH2Q02577 135 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 Q0VFX4 171 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ART3Q13508 389 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ABRAXAS2Q15018 415 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 QPRTQ15274 297 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 P2RY14Q15391 338 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 RNF151Q2KHN1 245 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ALKBH6Q3KRA9 238 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 FAM74A3Q4VXF1 159 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 AGKQ53H12 422 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 DCAF10Q5QP82 559 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PRR31Q5SQ13 230 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms