RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TEX47Q8TBZ9 253 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 ZNF582Q96NG8 517 aaPredicted RBP15.51■□□□□ 0.07
CLN3-202ENST00000355477 SLC30A2Q9BRI3 323 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 CMC2Q9NRP2 79 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 DDX28Q9NUL7 540 aaKnown RBP15.51■□□□□ 0.07
CLN3-202ENST00000355477 NPTNQ9Y639 398 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 ISPDA4D126 451 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 RIIAD1A6NNX1 92 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 RNF212BA8MTL3 300 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 M0R135 149 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 FKBP6O75344 327 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 IFNGP01579 166 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 IGHV2-70P01814 119 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 SPARCP09486 303 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 SBK2P0C263 348 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 ZNF3P17036 446 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 TNFRSF1AP19438 455 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 OTX1P32242 354 aaPredicted RBP15.5■□□□□ 0.07
CLN3-202ENST00000355477 GRK5P34947 590 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 ENTPD1P49961 510 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 CBX1P83916 185 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 BNIP1Q12981 228 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 SNAI3Q3KNW1 292 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 TEX30Q5JUR7 227 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 PAPD5Q8NDF8 572 aaKnown RBP15.5■□□□□ 0.07
CLN3-202ENST00000355477 OR6K6Q8NGW6 343 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 SPTSSAQ969W0 71 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 RAB39BQ96DA2 213 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 ZNF799Q96GE5 643 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 SIGLEC11Q96RL6 698 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 GAL3ST1Q99999 423 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 GCM1Q9NP62 436 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 G6PC2Q9NQR9 355 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 UBAP1Q9NZ09 502 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 PPP1R3CQ9UQK1 317 aa15.5■□□□□ 0.07
CLN3-202ENST00000355477 TRAV20A0A0B4J274 112 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 IGHV3-64DA0A0J9YX35 117 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 A0A1B0GWJ7 208 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 F5H5P2 479 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 SURF4O15260 269 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 E2F6O75461 281 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 ANPEPP15144 967 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 HOXB6P17509 224 aaKnown RBP15.49■□□□□ 0.07
CLN3-202ENST00000355477 PCMT1P22061 227 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 POU1F1P28069 291 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 SRP14P37108 136 aaKnown RBP15.49■□□□□ 0.07
CLN3-202ENST00000355477 GINS1Q14691 196 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 SLC27A4Q6P1M0 643 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 PEG10Q86TG7 708 aaKnown RBP15.49■□□□□ 0.07
CLN3-202ENST00000355477 PHC2Q8IXK0 858 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 ST7LQ8TDW4 575 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 OTULINQ96BN8 352 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 SLAMF6Q96DU3 332 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 MEGF10Q96KG7 1140 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 NTN4Q9HB63 628 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 TMEM100Q9NV29 134 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 DNAJB9Q9UBS3 223 aa15.49■□□□□ 0.07
CLN3-202ENST00000355477 AVPP01185 164 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 HLA-DPB1P04440 258 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 SLC6A9P48067 706 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 PRKXP51817 358 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 ZNF92Q03936 586 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 MALLQ13021 153 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 ZMYND11Q15326 602 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 FAHD2BQ6P2I3 314 aaPredicted RBP15.48■□□□□ 0.07
CLN3-202ENST00000355477 C1orf229Q6ZS94 237 aaPredicted RBP15.48■□□□□ 0.07
CLN3-202ENST00000355477 SPATC1Q76KD6 591 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 OR2AE1Q8NHA4 323 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 SPATA3Q8NHX4 192 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 ZNF420Q8TAQ5 688 aaPredicted RBP15.48■□□□□ 0.07
CLN3-202ENST00000355477 TMEM158Q8WZ71 300 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 FAHD2AQ96GK7 314 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 CENPMQ9NSP4 180 aa15.48■□□□□ 0.07
CLN3-202ENST00000355477 TMEM178BH3BS89 294 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 OSMP13725 252 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 SELEP16581 610 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 MMP16P51512 607 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 KRTAP24-1Q3LI83 254 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 DRAM2Q6UX65 266 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 PGAP1Q75T13 922 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 LRRC28Q86X40 367 aaPredicted RBP15.47■□□□□ 0.07
CLN3-202ENST00000355477 COPS4Q9BT78 406 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 YY1AP1Q9H869 796 aa15.47■□□□□ 0.07
CLN3-202ENST00000355477 TIPRLO75663 272 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 GLCEO94923 617 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 PNPP00491 289 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 SLC2A1P11166 492 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 ZFP36P26651 326 aaKnown RBP15.46■□□□□ 0.07
CLN3-202ENST00000355477 GSTT1P30711 240 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 PMELP40967 661 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 SRP9P49458 86 aaKnown RBP15.46■□□□□ 0.07
CLN3-202ENST00000355477 BLVRAP53004 296 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 BTG1P62324 171 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 LCN2P80188 198 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 CDK5Q00535 292 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 MAB21L1Q13394 359 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 EIF2B1Q14232 305 aaKnown RBP15.46■□□□□ 0.07
CLN3-202ENST00000355477 TAF13Q15543 124 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 GLYATL3Q5SZD4 288 aa15.46■□□□□ 0.07
CLN3-202ENST00000355477 TMEM236Q5W0B7 351 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms