RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 FAM20BO75063 409 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 CRYBA1P05813 215 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4L2P0CJ85 424 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4L3P0CJ86 424 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4L4P0CJ87 422 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4L5P0CJ88 424 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4L6P0CJ89 424 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4L7P0CJ90 424 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 COX5BP10606 129 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RAC2P15153 192 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 CFHR2P36980 270 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 CENPAP49450 140 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RAP1BP61224 184 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RAP1AP62834 184 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 ST3GAL3Q11203 375 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 MAB21L1Q13394 359 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 KRR1Q13601 381 aaKnown RBP7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RSPO1Q2MKA7 263 aaPredicted RBP7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 GPR157Q5UAW9 335 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4L9Q6RFH8 374 aaPredicted RBP7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 PTCHD4Q6ZW05 846 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 SYT9Q86SS6 491 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 LINC00346Q8IVM7 164 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 C1orf174Q8IYL3 243 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 OR4F5Q8NH21 305 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 LINC01006Q8NI28 216 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RASSF5Q8WWW0 418 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 UBE2FQ969M7 185 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 FAM46AQ96IP4 442 aaKnown RBP7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 PRRC1Q96M27 445 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 ZNF570Q96NI8 536 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 SLC30A2Q9BRI3 323 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 NUAK2Q9H093 628 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RABEP2Q9H5N1 569 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 GRHPRQ9UBQ7 328 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 DUX4Q9UBX2 424 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 MIOXQ9UGB7 285 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RPS6KA6Q9UK32 745 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 RNF114Q9Y508 228 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 MMP24Q9Y5R2 645 aa7.17□□□□□ -1.26
SHKBP1-220ENST00000599716 IGHV3OR15-7A0A075B7D8 119 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 A0A0U1RQK1 487 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 A0A1W2PRD5 423 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 A0A1W2PRF3 423 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 A0A1W2PRM7 423 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 GMNCA6NCL1 334 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 XKRYO14609 159 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 MRASO14807 208 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 GPR137BO60478 399 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 ZNF682O95780 498 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 IGF2P01344 180 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 CD14P08571 375 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 NR2C1P13056 603 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 MMP9P14780 707 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 FPR3P25089 353 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 KDELR2P33947 212 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 SRP9P49458 86 aaKnown RBP7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 PRKCDQ05655 676 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 AQP6Q13520 282 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 CYLC2Q14093 348 aaPredicted RBP7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 CLEC12AQ5QGZ9 265 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 AGBL2Q5U5Z8 902 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 FBXW12Q6X9E4 464 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 ZNF730Q6ZMV8 503 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 ZNF826PQ6ZT77 177 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 FAM122BQ7Z309 247 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 TSEN54Q7Z6J9 526 aaKnown RBP7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 OR13G1Q8NGZ3 307 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 LHX4Q969G2 390 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 PLEKHA8Q96JA3 519 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 ZNF582Q96NG8 517 aaPredicted RBP7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 FNDC11Q9BVV2 318 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 MMP27Q9H306 513 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 FN3KQ9H479 309 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 PRDM13Q9H4Q3 707 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 ADA2Q9NZK5 511 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 POLR1DQ9Y2S0 133 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 LHFPL6Q9Y693 200 aa7.16□□□□□ -1.26
SHKBP1-220ENST00000599716 IQCF6A8MYZ5 107 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 F5H5K5 113 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 M0QZ24 198 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 LCE2BO14633 110 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 TOX4O94842 621 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 NDUFA7O95182 113 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 GYPAP02724 150 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 PPIAL4GP0DN37 164 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 CA6P23280 308 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 RPS27P42677 84 aaKnown RBP7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 CDKN2AP42771 156 aaKnown RBP7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 PROK1P58294 105 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 FXYD6P3P58550 94 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 ARF6P62330 175 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 GK2Q14410 553 aaPredicted RBP7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 TRAM2Q15035 370 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 ZBED5Q49AG3 693 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 FAM205BPQ63HN1 556 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 Q6ZPA2 131 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 CFAP77Q6ZQR2 320 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 MBOAT2Q6ZWT7 520 aa7.15□□□□□ -1.26
SHKBP1-220ENST00000599716 NLRC3Q7RTR2 1065 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms