RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF443Q9Y2A4 671 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 LOC102725191A0A1B0GVB3 256 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 A0A1W2PQD3 144 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CDC14CA4D256 554 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 DISC1C4P0D8 188 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SLC2A10O95528 541 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ESDP10768 282 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ARL3P36405 182 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 PDLIM4P50479 330 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 MFGE8Q08431 387 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 LASP1Q14847 261 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 AVPI1Q5T686 147 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 UNQ6126/PRO20091Q6UXV3 157 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 LYG2Q86SG7 212 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF561Q8N587 486 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 RNF141Q8WVD5 230 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CNN2Q99439 309 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 DUSP23Q9BVJ7 150 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TPSD1Q9BZJ3 242 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CHST5Q9GZS9 411 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF355PQ9NSJ1 428 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TAS2R10Q9NYW0 307 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 FBXL4Q9UKA2 621 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 A0A1B0GWA3 101 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 M0R296 226 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TLX3O43711 291 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF888P0CJ79 500 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TM4SF4P48230 202 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TNFRSF17Q02223 184 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 PRTGQ2VWP7 1150 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OR6C4Q8NGE1 309 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NUDCD2Q8WVJ2 157 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 S100A16Q96FQ6 103 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 IMMP2LQ96T52 175 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OCSTAMPQ9BR26 566 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 PAPOLGQ9BWT3 736 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OR10A4Q9H209 315 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 KIR3DX1Q9H7L2 352 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF701Q9NV72 531 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 STEAP1Q9UHE8 339 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TUBD1Q9UJT1 453 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TBX21Q9UL17 535 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 GPR52Q9Y2T5 361 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 IGKV3D-11A0A0A0MRZ8 115 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TVP23AA6NH52 213 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM212A6NML5 194 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NPIPA3F8WFD2 350 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 AKR1C4P17516 323 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ACTR1BP42025 376 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SOX2P48431 317 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 EMDP50402 254 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 HNRNPKP61978 463 aaKnown RBP eCLIP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NTHL1P78549 312 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CYCSP99999 105 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 EGR4Q05215 589 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ATXN7L3Q14CW9 347 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 THAP6Q8TBB0 222 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 STK35Q8TDR2 534 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NAT6Q93015 286 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ARRDC3Q96B67 414 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ANKRD9Q96BM1 317 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SYT4Q9H2B2 425 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 LINC00597Q9H2U6 94 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 EIF3GO75821 320 aaKnown RBP eCLIP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CHRM2P08172 466 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SPP1P10451 314 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 FCARP24071 287 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ACKR3P25106 362 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 GPR3P46089 330 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SMAD4Q13485 552 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 USF2Q15853 346 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SGCAQ16586 387 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 C17orf107Q6ZR85 190 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OR1J1Q8NGS3 322 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 C16orf58Q96GQ5 468 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM121BQ9BXQ6 578 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 EIF5A2Q9GZV4 153 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SPACA1Q9HBV2 294 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 FAM86C1Q9NVL1 165 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 A0A1W2PP55 124 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OR6C76A6NM76 312 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 POM121CA8CG34 1229 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 FAM171A2A8MVW0 826 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 KLK10O43240 276 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 PAK4O96013 591 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 AKAIN1P0CW23 69 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 GPX4P36969 197 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CDX1P47902 265 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NPY4RP50391 375 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 BLOC1S1P78537 153 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 LTBQ06643 244 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 GRM7Q14831 915 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SHHQ15465 462 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 FAM209BQ5JX69 171 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 PLBD1Q6P4A8 553 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ALKAL2Q6UX46 152 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 APOOLQ6UXV4 268 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF441Q8N8Z8 693 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 BPIFCQ8NFQ6 507 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 FOXN4Q96NZ1 517 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms