RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KCNJ16Q9NPI9 418 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 ATPIF1Q9UII2 106 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 R4GMQ9 66 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 UTP20O75691 2785 aaKnown RBP12.41□□□□□ -0.42
SKA1-202ENST00000398452 NOTCH2Q04721 2471 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ARPC4-TTLL3A0A0A6YYG9 625 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 SMIM31A0A1B0GVY4 71 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 OR5H1A6NKK0 313 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 M0R135 149 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ST8SIA5O15466 376 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 SERPINA3P01011 423 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 RNF224P0DH78 156 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 COX5BP10606 129 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 PSKH1P11801 424 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 CD36P16671 472 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 CPEP16870 476 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 CCNOP22674 350 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 CX3CR1P49238 355 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 RGS6P49758 472 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 PSMA6P60900 246 aaKnown RBP12.4□□□□□ -0.42
SKA1-202ENST00000398452 TUBA1BP68363 451 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 SLC3A1Q07837 685 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ALKBH1Q13686 389 aaKnown RBP12.4□□□□□ -0.42
SKA1-202ENST00000398452 TSC22D1Q15714 1073 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 TBC1D28Q2M2D7 210 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 TIMM23BQ5SRD1 257 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ZNF684Q5T5D7 378 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 BCL2L15Q5TBC7 163 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 LIPKQ5VXJ0 399 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 TUBA1AQ71U36 451 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 MDP1Q86V88 176 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ZNF676Q8N7Q3 588 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 RELL2Q8NC24 303 aaPredicted RBP12.4□□□□□ -0.42
SKA1-202ENST00000398452 OR13F1Q8NGS4 319 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ZNF799Q96GE5 643 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 OPALINQ96PE5 141 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ACTR6Q9GZN1 396 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 DDX28Q9NUL7 540 aaKnown RBP12.4□□□□□ -0.42
SKA1-202ENST00000398452 N6AMT1Q9Y5N5 214 aa12.4□□□□□ -0.42
SKA1-202ENST00000398452 ACOD1A6NK06 481 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 TMEM212A6NML5 194 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 SYNGR3O43761 229 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 GPRIN2O60269 458 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 MMP7P09237 267 aaPredicted RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 CBR1P16152 277 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 PPP3CBP16298 524 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 CD53P19397 219 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 GTF2A1P52655 376 aaPredicted RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 GP2P55259 537 aaKnown RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 TPBGQ13641 420 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 CDK5R1Q15078 307 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 ALKBH2Q6NS38 261 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 DRAM2Q6UX65 266 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 UNQ6126/PRO20091Q6UXV3 157 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 STAC2Q6ZMT1 411 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 ZNF704Q6ZNC4 412 aaPredicted RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 COMMD2Q86X83 199 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 CLVS1Q8IUQ0 354 aaPredicted RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 LIX1LQ8IVB5 337 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 MS4A15Q8N5U1 240 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 ZFP41Q8N8Y5 198 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 OR5AK2Q8NH90 309 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 SSC4DQ8WTU2 575 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 S100PBPQ96BU1 408 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 SMIM19Q96E16 107 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 PGAM5Q96HS1 289 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 BOD1Q96IK1 185 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 DCLRE1CQ96SD1 692 aaKnown RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 DOK1Q99704 481 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 KCNS3Q9BQ31 491 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 WNT5BQ9H1J7 359 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 OR10A4Q9H209 315 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 CDH20Q9HBT6 801 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 EXOSC4Q9NPD3 245 aaKnown RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 NGBQ9NPG2 151 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 BRD7Q9NPI1 651 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 JKAMPQ9P055 326 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 EIF3KQ9UBQ5 218 aaKnown RBP12.39□□□□□ -0.43
SKA1-202ENST00000398452 GRIP1Q9Y3R0 1128 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 CACNA1DQ01668 2161 aa12.39□□□□□ -0.43
SKA1-202ENST00000398452 A0A1W2PR80 420 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 TBX1O43435 398 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 PLPP2O43688 288 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 ABHD16AO95870 558 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 HLA-DPB1P04440 258 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 STOMP27105 288 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 IDH3GP51553 393 aaPredicted RBP12.38□□□□□ -0.43
SKA1-202ENST00000398452 CCR9P51686 369 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 FAM27E3Q08E93 113 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 PPA1Q15181 289 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 GPR107Q5VW38 600 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 XKRXQ6PP77 449 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 PHC2Q8IXK0 858 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 ZNF485Q8NCK3 441 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 OR52H1Q8NGJ2 320 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 OR10S1Q8NGN2 331 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 OR2G2Q8NGZ5 317 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 LILRB4Q8NHJ6 448 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 FGFBP3Q8TAT2 258 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 HSD17B8Q92506 261 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms