RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 CIB1Q99828 191 aa16.4■□□□□ 0.22
SYNE4-202ENST00000340477 EGLN1Q9GZT9 426 aa16.4■□□□□ 0.22
SYNE4-202ENST00000340477 CENPMQ9NSP4 180 aa16.4■□□□□ 0.22
SYNE4-202ENST00000340477 DDX28Q9NUL7 540 aaKnown RBP16.4■□□□□ 0.22
SYNE4-202ENST00000340477 NKIRAS2Q9NYR9 191 aa16.4■□□□□ 0.22
SYNE4-202ENST00000340477 PTTG3PQ9NZH4 202 aa16.4■□□□□ 0.22
SYNE4-202ENST00000340477 STARD10Q9Y365 291 aa16.4■□□□□ 0.22
SYNE4-202ENST00000340477 MTORP42345 2549 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 HEXAP06865 529 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 ACSM4P0C7M7 580 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 RAC2P15153 192 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 USF1P22415 310 aaPredicted RBP16.39■□□□□ 0.21
SYNE4-202ENST00000340477 TNFSF4P23510 183 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 HSD11B1P28845 292 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 GRB2P62993 217 aaKnown RBP16.39■□□□□ 0.21
SYNE4-202ENST00000340477 MRPS11P82912 194 aaKnown RBP16.39■□□□□ 0.21
SYNE4-202ENST00000340477 PSG7Q13046 419 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 GGTLC2Q14390 218 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 PCK2Q16822 640 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 MAPK1IP1LQ8NDC0 245 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 CMBLQ96DG6 245 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 PKP2Q99959 881 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 RIBC2Q9H4K1 309 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 GSX1Q9H4S2 264 aaPredicted RBP16.39■□□□□ 0.21
SYNE4-202ENST00000340477 SAP30LQ9HAJ7 183 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 PNRC2Q9NPJ4 139 aaKnown RBP16.39■□□□□ 0.21
SYNE4-202ENST00000340477 H2AFY2Q9P0M6 372 aaPredicted RBP16.39■□□□□ 0.21
SYNE4-202ENST00000340477 PURGQ9UJV8 347 aaKnown RBP16.39■□□□□ 0.21
SYNE4-202ENST00000340477 ZDHHC8Q9ULC8 765 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 CR1P17927 2039 aa16.39■□□□□ 0.21
SYNE4-202ENST00000340477 SPRY3O43610 288 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 APOC1P02654 83 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 HPXP02790 462 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 SELEP16581 610 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 ACHEP22303 614 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 NR4A2P43354 598 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 CCL8P80075 99 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 LOXL1Q08397 574 aaPredicted RBP16.38■□□□□ 0.21
SYNE4-202ENST00000340477 TSTQ16762 297 aaKnown RBP16.38■□□□□ 0.21
SYNE4-202ENST00000340477 KRTAP27-1Q3LI81 207 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 SLX4IPQ5VYV7 408 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 DRAM2Q6UX65 266 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 DPY19L4Q7Z388 723 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 ZNF454Q8N9F8 522 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 SMR3AQ99954 134 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 C1QTNF5Q9BXJ0 243 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 POFUT1Q9H488 388 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 TOR3AQ9H497 397 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 SP140LQ9H930 580 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 MARCH7Q9H992 704 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 CHODLQ9H9P2 273 aa16.38■□□□□ 0.21
SYNE4-202ENST00000340477 ZAR1LA6NP61 321 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 H3BNX3 289 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 LY6G6DO95868 133 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 KITLGP21583 273 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 GIFP27352 417 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 MAGEB1P43366 347 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 MMP15P51511 669 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 RAD23AP54725 363 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 PPP2R2BQ00005 443 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 APOFQ13790 326 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 FBXW12Q6X9E4 464 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 ZNF283Q8N7M2 679 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 ST7LQ8TDW4 575 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 HAVCR1Q96D42 359 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 ELMOD3Q96FG2 381 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 KCNJ15Q99712 375 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 S100A14Q9HCY8 104 aa16.37■□□□□ 0.21
SYNE4-202ENST00000340477 ZSCAN5BA6NJL1 495 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 NCR1O76036 304 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 IGHV1-46P01743 117 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 LYNP07948 512 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 COLCA1Q6ZS62 124 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 SPATC1Q76KD6 591 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 MRPL21Q7Z2W9 205 aaKnown RBP16.36■□□□□ 0.21
SYNE4-202ENST00000340477 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.36■□□□□ 0.21
SYNE4-202ENST00000340477 TIGD4Q8IY51 512 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 TCEANCQ8N8B7 351 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 BBS1Q8NFJ9 593 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 OR10S1Q8NGN2 331 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 GTF3AQ92664 365 aaKnown RBP16.36■□□□□ 0.21
SYNE4-202ENST00000340477 ZNF582Q96NG8 517 aaPredicted RBP16.36■□□□□ 0.21
SYNE4-202ENST00000340477 ABHD6Q9BV23 337 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 GABARAPL3Q9BY60 117 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 BPESC1Q9GZL8 116 aa16.36■□□□□ 0.21
SYNE4-202ENST00000340477 TMEFF2Q9UIK5 374 aaPredicted RBP16.36■□□□□ 0.21
SYNE4-202ENST00000340477 VWC2LB2RUY7 222 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 TLX2O43763 284 aaPredicted RBP16.35■□□□□ 0.21
SYNE4-202ENST00000340477 PRKYO43930 277 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 SELENOFO60613 162 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 ADH4P08319 380 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 H2BFMP0C1H6 154 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 PSKH1P11801 424 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 NAA10P41227 235 aaPredicted RBP16.35■□□□□ 0.21
SYNE4-202ENST00000340477 GPR6P46095 362 aaPredicted RBP16.35■□□□□ 0.21
SYNE4-202ENST00000340477 PRKXP51817 358 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 CHN2P52757 468 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 CDC42P60953 191 aa16.35■□□□□ 0.21
SYNE4-202ENST00000340477 HLXQ14774 488 aaPredicted RBP16.35■□□□□ 0.21
SYNE4-202ENST00000340477 HFEQ30201 348 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms