RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PRKNO60260 465 aaPredicted RBP11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 LAP3P28838 519 aa11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 CD1CP29017 333 aa11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 CX3CR1P49238 355 aa11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 RPL18Q07020 188 aaKnown RBP11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 SKP2Q13309 424 aa11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 ZNF565Q8N9K5 539 aa11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 MAFIPQ8WZ33 124 aa11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 SAT2Q96F10 170 aaPredicted RBP11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 POLE3Q9NRF9 147 aa11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 METTL1Q9UBP6 276 aaKnown RBP11.56□□□□□ -0.56
SFSWAP-209ENST00000540469 C7orf77A4D0Y5 90 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 ST8SIA5O15466 376 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 NKX2-2O95096 273 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 NUDT14O95848 222 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 IGKV1D-16P01601 117 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 PRF1P14222 555 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 SLC18B1Q6NT16 456 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 FBXO42Q6P3S6 717 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 METTL21AQ8WXB1 218 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 AP4M1O00189 453 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 EFSO43281 561 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 CTSVO60911 334 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 CISD3P0C7P0 127 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 FAM157CP0CG43 387 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 PET100P0DJ07 73 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 FOLR2P14207 255 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 PVRP15151 417 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 RAB5AP20339 215 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 PPM1FP49593 454 aaPredicted RBP11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 RAB5CP51148 216 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 TAS2R31P59538 309 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 SRSF4Q08170 494 aaKnown RBP11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 CCINQ13939 588 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 SLC17A1Q14916 467 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 ALG11Q2TAA5 492 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 MST1LQ2TV78 715 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 PLPP4Q5VZY2 271 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 KCTD18Q6PI47 426 aaPredicted RBP11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 DRAM2Q6UX65 266 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 TTLL10Q6ZVT0 673 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 GRASPQ7Z6J2 395 aaPredicted RBP11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 MARCH3Q86UD3 253 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 ZNF101Q8IZC7 436 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 OR4C3Q8NH37 302 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 OR51F2Q8NH61 342 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 RAB3CQ96E17 227 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 HHIPL1Q96JK4 782 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 TOLLIPQ9H0E2 274 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 TMPRSS5Q9H3S3 457 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 B9D1Q9UPM9 204 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 MFNGO00587 321 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 PRH1P02810 166 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 GNB3P16520 340 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 VIPR2P41587 438 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 RPS10P46783 165 aaKnown RBP11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 DVL1P1P54792 670 aaPredicted RBP11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 CASP6P55212 293 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 PSG6Q00889 435 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 BHLHE23Q8NDY6 225 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 OR4K15Q8NH41 348 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 RAB7BQ96AH8 199 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 SGK3Q96BR1 496 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 TMEM41AQ96HV5 264 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 IP6K3Q96PC2 410 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 TIMM29Q9BSF4 260 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 TGIF2Q9GZN2 237 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 CYTL1Q9NRR1 136 aa11.55□□□□□ -0.56
SFSWAP-209ENST00000540469 CNTRLQ7Z7A1 2325 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 A0A1W2PP55 124 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 MEGF11A6BM72 1044 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 SERINC4A6NH21 518 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 H0YIZ8 118 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 SLC31A1O15431 190 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 SLC16A7O60669 478 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 FBP1P09467 338 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 CSRP1P21291 193 aaKnown RBP11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 CEBPGP53567 150 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 RAB32Q13637 225 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 MESTQ5EB52 335 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 FIGLAQ6QHK4 219 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 OTOSQ8NHW6 89 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 FAM174AQ8TBP5 190 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 PMM1Q92871 262 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 SLC22A18Q96BI1 424 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 OR8B4Q96RC9 309 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 LPAR4Q99677 370 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 RNF126Q9BV68 326 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 RNF122Q9H9V4 155 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 MAFFQ9ULX9 164 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 EMC9Q9Y3B6 208 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 ATG2BQ96BY7 2078 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 PNPP00491 289 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 IFNA17P01571 189 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 IGHV2-70P01814 119 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 OR8U9P0C7N5 309 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 ZNF74Q16587 644 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 PSRC1Q6PGN9 363 aaPredicted RBP11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 VITQ6UXI7 678 aa11.54□□□□□ -0.56
SFSWAP-209ENST00000540469 MDGA2Q7Z553 956 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms