RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ZNF295-AS1Q8N0V1 137 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 ST7LQ8TDW4 575 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 KCNS3Q9BQ31 491 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 HDHD2Q9H0R4 259 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 RNF115Q9Y4L5 304 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 IGHV2OR16-5A0A0B4J2B6 119 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 OR6C6A6NF89 314 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 SYNGR3O43761 229 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 PTHP01270 115 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 CCL2P13500 99 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 STOMP27105 288 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 APLNRP35414 380 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 POU4F2Q12837 409 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 SMN1Q16637 294 aaKnown RBP25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 ELFN2Q5R3F8 820 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 OTOSQ8NHW6 89 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 ANKRD60Q9BZ19 345 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 PNRC2Q9NPJ4 139 aaKnown RBP25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 ABCA12Q86UK0 2595 aa25.68■■□□□ 1.7
LIMCH1-211ENST00000509638 ATP6V1G2-DDX39BF2Z307 99 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 CRYAAP02489 173 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 SBK2P0C263 348 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 CALCRP30988 508 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 TBC1D28Q2M2D7 210 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 CDC20BQ86Y33 519 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 KBTBD8Q8NFY9 601 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 OR10S1Q8NGN2 331 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 RNFT2Q96EX2 444 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 YIPF3Q9GZM5 350 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 KLHDC2Q9Y2U9 406 aa25.67■■□□□ 1.7
LIMCH1-211ENST00000509638 CTAG2O75638 210 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 DBTP11182 482 aaKnown RBP25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 SLC22A25Q6T423 547 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 THAP5Q7Z6K1 395 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 PAQR4Q8N4S7 273 aaPredicted RBP25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 ZNF454Q8N9F8 522 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 OR1F12Q8NHA8 337 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 ATF6BQ99941 703 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 ABHD6Q9BV23 337 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 AMBNQ9NP70 447 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 RAB26Q9ULW5 256 aa25.66■■□□□ 1.7
LIMCH1-211ENST00000509638 LOC100509620A0A075B734 347 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 FAM221AA4D161 298 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 C5orf49A4QMS7 147 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 COX5BP10606 129 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 ATP6V1E1P36543 226 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 GDI2P50395 445 aaKnown RBP25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 HCCSP53701 268 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 TLE4Q04727 773 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 SLC35F2Q8IXU6 374 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 IL17RDQ8NFM7 739 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 SLC7A6Q92536 515 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 SLAMF6Q96DU3 332 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 C14orf79Q96F83 325 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 POM121L2Q96KW2 1035 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 AMELYQ99218 206 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 TMEM204Q9BSN7 226 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 ATPIF1Q9UII2 106 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 LAMP5Q9UJQ1 280 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 FLNBO75369 2602 aaKnown RBP25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 PLAUP00749 431 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 LYNP07948 512 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 CCNOP22674 350 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 MYF6P23409 242 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 ZNF704Q6ZNC4 412 aaPredicted RBP25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 SPATC1Q76KD6 591 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 TMEM200AQ86VY9 491 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 OR4F15Q8NGB8 312 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 FBLIM1Q8WUP2 373 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 RADILQ96JH8 1075 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 COQ7Q99807 217 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 CDH20Q9HBT6 801 aa25.65■■□□□ 1.7
LIMCH1-211ENST00000509638 ZNF35P13682 527 aa25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 CDK5R2Q13319 367 aa25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 RFLNBQ8N5W9 214 aa25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 OR1J2Q8NGS2 313 aa25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 THEM6Q8WUY1 208 aa25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 CLEC4MQ9H2X3 399 aaPredicted RBP25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 DDX28Q9NUL7 540 aaKnown RBP25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 COPS3Q9UNS2 423 aa25.64■■□□□ 1.69
LIMCH1-211ENST00000509638 A0A1W2PPR1 153 aa25.63■■□□□ 1.69
LIMCH1-211ENST00000509638 SHISA9B4DS77 424 aa25.63■■□□□ 1.69
LIMCH1-211ENST00000509638 ZNF878C9JN71 531 aa25.63■■□□□ 1.69
LIMCH1-211ENST00000509638 COPS4Q9BT78 406 aa25.63■■□□□ 1.69
LIMCH1-211ENST00000509638 TTTY10Q9BZA0 68 aa25.63■■□□□ 1.69
LIMCH1-211ENST00000509638 POU2F3Q9UKI9 436 aa25.63■■□□□ 1.69
LIMCH1-211ENST00000509638 RPL36Q9Y3U8 105 aaKnown RBP25.63■■□□□ 1.69
LIMCH1-211ENST00000509638 DBHP09172 617 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 ALOX5APP20292 161 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 OR10H4Q8NGA5 316 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 RNF133Q8WVZ7 376 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 LGALS12Q96DT0 336 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 CNBD2Q96M20 576 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 TBX5Q99593 518 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 CENPMQ9NSP4 180 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 TMEM14AQ9Y6G1 99 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 APCP25054 2843 aa25.62■■□□□ 1.69
LIMCH1-211ENST00000509638 SSTR2P30874 369 aa25.61■■□□□ 1.69
LIMCH1-211ENST00000509638 GALK2Q01415 458 aa25.61■■□□□ 1.69
LIMCH1-211ENST00000509638 ECH1Q13011 328 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms