RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GABRA3P34903 492 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 GDI2P50395 445 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SUPT4H1P63272 117 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 MTFR2Q6P444 385 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SLC39A5Q6ZMH5 540 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 PARS2Q7L3T8 475 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 GABRG1Q8N1C3 465 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 D2HGDHQ8N465 521 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR5J2Q8NH18 312 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FAM174AQ8TBP5 190 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 BPIFA2Q96DR5 249 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 MMABQ96EY8 250 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 CMKLR1Q99788 373 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 DAPP1Q9UN19 280 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 PCDHGA1Q9Y5H4 931 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 PCM1Q15154 2024 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TCRBV16S1A1N1A0A5B0 115 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SMCO3A2RU48 225 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 KLRC4-KLRK1H3BQV0 150 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SCGB2A1O75556 95 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 CD63P08962 238 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 CBR1P16152 277 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 S100A2P29034 98 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 PTGFRP43088 359 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FNTBP49356 437 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF77Q15935 545 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF776Q68DI1 518 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SLC25A25Q6KCM7 469 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 HOGA1Q86XE5 327 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 BOLLQ8N9W6 283 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 CD300LFQ8TDQ1 290 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 RAB8BQ92930 207 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR7D2Q96RA2 312 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SLC6A7Q99884 636 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 XKR8Q9H6D3 395 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 STARD5Q9NSY2 213 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SEMA5BQ9P283 1151 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FTCDNL1E5RQL4 147 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 LATO43561 262 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 PLATP00750 562 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TIMP1P01033 207 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FOLR1P15328 257 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 KIR3DL2P43630 455 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR3A2P47893 321 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SRP9P49458 86 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR10A3P58181 314 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 PSG6Q00889 435 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FOXF1Q12946 379 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 HNRNPA1L2Q32P51 320 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FOXL2NBQ6ZUU3 175 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 RCBTB1Q8NDN9 531 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 CPNE4Q96A23 557 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 THOC3Q96J01 351 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SMOC1Q9H4F8 434 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FN3KRPQ9HA64 309 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 VSX1Q9NZR4 365 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 APOBEC3BQ9UH17 382 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SLC17A4Q9Y2C5 497 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 MEMO1Q9Y316 297 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TMED3Q9Y3Q3 217 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 EP400Q96L91 3159 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 KLF8O95600 359 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 GKN3PP0CG01 181 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 RAB6AP20340 208 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SSTR2P30874 369 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ERVFC1P60507 584 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 RPS26P62854 115 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ARFRP1Q13795 201 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 NNATQ16517 81 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 AMER3Q8N944 861 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 POC1AQ8NBT0 407 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR51G2Q8NGK0 314 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 GPBAR1Q8TDU6 330 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 RAB24Q969Q5 203 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ARSGQ96EG1 525 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 VSTM2LQ96N03 204 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TGM7Q96PF1 710 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OPA3Q9H6K4 179 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 KCNK12Q9HB15 430 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 CNIH4Q9P003 139 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TRBV24-1A0A075B6N3 115 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ARGFXA6NJG6 315 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 MASP2O00187 686 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TGOLN2O43493 480 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 MAS1P04201 325 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TYMSP04818 313 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ABHD17BQ5VST6 288 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ATG4DQ86TL0 474 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR1J4Q8NGS1 313 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ST7LQ8TDW4 575 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 KPTNQ9Y664 436 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 GXYLT2A0PJZ3 443 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ATXN7O15265 892 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 SLC34A2O95436 690 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 AIFM1O95831 613 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 LSSP48449 732 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 NKAPLQ5M9Q1 402 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FAM69BQ5VUD6 431 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR4C11Q6IEV9 310 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF761Q86XN6 746 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 124.9 ms