RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DDX28Q9NUL7 540 aaKnown RBP6□□□□□ -1.45
VPS41-208ENST00000448833 PLEK2Q9NYT0 353 aa6□□□□□ -1.45
VPS41-208ENST00000448833 IL20RAQ9UHF4 553 aa6□□□□□ -1.45
VPS41-208ENST00000448833 SAMD4AQ9UPU9 718 aaKnown RBP6□□□□□ -1.45
VPS41-208ENST00000448833 AURKCQ9UQB9 309 aa6□□□□□ -1.45
VPS41-208ENST00000448833 PPP1R3CQ9UQK1 317 aa6□□□□□ -1.45
VPS41-208ENST00000448833 POLR3KQ9Y2Y1 108 aaPredicted RBP6□□□□□ -1.45
VPS41-208ENST00000448833 NOP16Q9Y3C1 178 aaKnown RBP6□□□□□ -1.45
VPS41-208ENST00000448833 NPTNQ9Y639 398 aa6□□□□□ -1.45
VPS41-208ENST00000448833 ENPP4Q9Y6X5 453 aa6□□□□□ -1.45
VPS41-208ENST00000448833 TMEM89A2RUT3 159 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 LRRC30A6NM36 301 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 J3QL48 77 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 IMPA2O14732 288 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 PIP5K1CO60331 668 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 SLC16A7O60669 478 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 VENTXO95231 258 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 FSTL3O95633 263 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 SERPINA1P01009 418 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 NGFP01138 241 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 H1F0P07305 194 aaKnown RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 SBK2P0C263 348 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 COX4I1P13073 169 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 SELEP16581 610 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 CFPP27918 469 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 IFNGR2P38484 337 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 MPV17P39210 176 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 YAP1P46937 504 aaKnown RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 SRP9P49458 86 aaKnown RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 GLO1Q04760 184 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 ECH1Q13011 328 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 PSG7Q13046 419 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 ENDOGQ14249 297 aaKnown RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 KCNMB1Q16558 191 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 SLC36A3Q495N2 470 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 ESCO2Q56NI9 601 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 RFPL4BQ6ZWI9 263 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 VTCN1Q7Z7D3 282 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 IGFN1Q86VF2 1251 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 LRRC28Q86X40 367 aaPredicted RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 C1orf87Q8N0U7 546 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 ZNF283Q8N7M2 679 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 OR2Z1Q8NG97 314 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 OR13C2Q8NGS9 318 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 OR1F12Q8NHA8 337 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 APOBEC3DQ96AK3 386 aaPredicted RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 CMBLQ96DG6 245 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 PLEKHA8Q96JA3 519 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 ZNF582Q96NG8 517 aaPredicted RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 KCTD14Q9BQ13 255 aaPredicted RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 HCAR1Q9BXC0 346 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 TMPRSS13Q9BYE2 586 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 HDHD2Q9H0R4 259 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 MSL2Q9HCI7 577 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 MED4Q9NPJ6 270 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 NRIP3Q9NQ35 241 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 TMEM106BQ9NUM4 274 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 CMTM6Q9NX76 183 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 UBAP1Q9NZ09 502 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 RHCGQ9UBD6 479 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 PURGQ9UJV8 347 aaKnown RBP5.99□□□□□ -1.45
VPS41-208ENST00000448833 NBEAL1Q6ZS30 2694 aa5.99□□□□□ -1.45
VPS41-208ENST00000448833 ARHGAP32A7KAX9 2087 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 LOC105371242A0A075B767 164 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 IGKV1D-43A0A0B4J1Z2 117 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 ZSCAN5BA6NJL1 495 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 FFAR1O14842 300 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 IDH3BO43837 385 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 PTP4A3O75365 173 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 PRSS23O95084 383 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 RENP00797 406 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 IGHV2-70P01814 119 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 PPIAL4GP0DN37 164 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 IRF2P14316 349 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 MDH2P40926 338 aaKnown RBP5.98□□□□□ -1.45
VPS41-208ENST00000448833 GPR4P46093 362 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 SLC6A9P48067 706 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 BTG1P62324 171 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 LCN2P80188 198 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 SRSF2Q01130 221 aaKnown RBP5.98□□□□□ -1.45
VPS41-208ENST00000448833 FOXL1Q12952 345 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 MALLQ13021 153 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 KRR1Q13601 381 aaKnown RBP5.98□□□□□ -1.45
VPS41-208ENST00000448833 FHL1Q13642 323 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 ARMCX4Q5H9R4 360 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 SMARCD3Q6STE5 483 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 BTNL3Q6UXE8 466 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 FBXW12Q6X9E4 464 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 NLRC3Q7RTR2 1065 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 FAM122BQ7Z309 247 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 LINC00471Q8N535 108 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 ATG16L2Q8NAA4 619 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 SLC7A13Q8TCU3 470 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 ERGIC1Q969X5 290 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 MCUR1Q96AQ8 359 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 HSH2DQ96JZ2 352 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 Q96M85 177 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 GPX7Q96SL4 187 aaPredicted RBP5.98□□□□□ -1.45
VPS41-208ENST00000448833 CDADC1Q9BWV3 514 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms