RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PCK2Q16822 640 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 MOGAT2Q3SYC2 334 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 ZNF626Q68DY1 528 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 SLAMF6Q96DU3 332 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 RASL10BQ96S79 203 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 SDHAF3Q9NRP4 125 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 PTTG3PQ9NZH4 202 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 PIPOXQ9P0Z9 390 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 FREM2Q5SZK8 3169 aa16.36■□□□□ 0.21
SHKBP1-201ENST00000291842 EML6Q6ZMW3 1958 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 ADAMTS9Q9P2N4 1935 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 RAMP1O60894 148 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 AQP8O94778 261 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 SIX6O95475 246 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 ZNF28P17035 718 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 OR4D6Q8NGJ1 314 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 RNF133Q8WVZ7 376 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 MRGPRX4Q96LA9 322 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 RBP7Q96R05 134 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 POTEKPQ9BYX7 375 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 GAREM1Q9H706 876 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 GPN1Q9HCN4 374 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 RPH3AQ9Y2J0 694 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 PHF3Q92576 2039 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 NAGAP17050 411 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 ACHEP22303 614 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 GNALP38405 381 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 OR10S1Q8NGN2 331 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 RNF138Q8WVD3 245 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 CHST6Q9GZX3 395 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 TAS2R8Q9NYW2 309 aa16.35■□□□□ 0.21
SHKBP1-201ENST00000291842 NOS1APO75052 506 aaPredicted RBP16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 ACSM4P0C7M7 580 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 AKAIN1P0CW23 69 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 FSTP19883 344 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 CLRN1P58418 232 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 C2orf68Q2NKX9 166 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 CFAP77Q6ZQR2 320 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 Q7L0L9 218 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 CDH24Q86UP0 819 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 UEVLDQ8IX04 471 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 MAFAQ8NHW3 353 aaPredicted RBP16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 SEH1LQ96EE3 360 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 SORCS2Q96PQ0 1159 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 B3GNT4Q9C0J1 378 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 CYB5R1Q9UHQ9 305 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 M0QYG6 137 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 ISG15P05161 165 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 STEAP1BQ6NZ63 245 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 ZNF704Q6ZNC4 412 aaPredicted RBP16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 WDSUB1Q8N9V3 476 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 CLEC1AQ8NC01 280 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 ACBD4Q8NC06 268 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 OR2M3Q8NG83 312 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 OR6M1Q8NGM8 313 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 SPACA9Q96E40 222 aaPredicted RBP16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 UTP23Q9BRU9 249 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 PRDM6Q9NQX0 595 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 FAM206AQ9NX38 181 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 PILRBQ9UKJ0 227 aa16.34■□□□□ 0.21
SHKBP1-201ENST00000291842 TEX51A0A1B0GUA7 166 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 SLC22A5O76082 557 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 TPPPO94811 219 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 PDGFBP01127 241 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 TTRP02766 147 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 SLC2A1P11166 492 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 ZNF24P17028 368 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 TMEM176BQ3YBM2 270 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 TMEM244Q5VVB8 128 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 C3orf33Q6P1S2 294 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 SLC36A1Q7Z2H8 476 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 IFI44Q8TCB0 444 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 SLC22A8Q8TCC7 542 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 GPX8Q8TED1 209 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 MED30Q96HR3 178 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 MRPL13Q9BYD1 178 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 PTGES2Q9H7Z7 377 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 SLC17A5Q9NRA2 495 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 POLR1DQ9Y2S0 133 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 CNTRLQ7Z7A1 2325 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 TTLL8A6PVC2 850 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 PATE3B3GLJ2 98 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 CFDP00746 253 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 IL5P05113 134 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 CPN1P15169 458 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 MSX1P28360 303 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 LAP3P28838 519 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 OR3A3P47888 321 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 DLX5P56178 289 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 POU4F3Q15319 338 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 PMS2CLQ68D20 193 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 KLHL24Q6TFL4 600 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 ADGRE4PQ86SQ3 457 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 GABRG1Q8N1C3 465 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 FAM46BQ96A09 425 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 ADAT3Q96EY9 351 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 CNTD2Q9H8S5 307 aa16.33■□□□□ 0.2
SHKBP1-201ENST00000291842 TMEM265A0A087WTH1 108 aa16.32■□□□□ 0.2
SHKBP1-201ENST00000291842 A0A1W2PNV4 684 aa16.32■□□□□ 0.2
SHKBP1-201ENST00000291842 NPIPB13A6NJU9 1138 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 165.3 ms