RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 LINC00470Q9BZP3 86 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 MS4A5Q9H3V2 200 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 REEP1Q9H902 201 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 MTHFD2LQ9H903 347 aaPredicted RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 KRT84Q9NSB2 600 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 SCN3BQ9NY72 215 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 REV1Q9UBZ9 1251 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 CORO2BQ9UQ03 480 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 NOX1Q9Y5S8 564 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 PKD1L1Q8TDX9 2849 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 PRAMEF27A3QJZ7 478 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 CDHR4A6H8M9 788 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 RPL36A-HNRNPH2H7BZ11 118 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 PNPP00491 289 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 TFP02787 698 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 LCKP06239 509 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 DBIP07108 87 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 IGFBP1P08833 259 aaPredicted RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 ACHEP22303 614 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 LIPAP38571 399 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ARHGDIAP52565 204 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 VBP1P61758 197 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 NCS1P62166 190 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ARF1P84077 181 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 LRRC74AQ0VAA2 488 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 CEACAM16Q2WEN9 425 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ZNF311Q5JNZ3 666 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ELFN2Q5R3F8 820 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 WBP2NLQ6ICG8 309 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 USP43Q70EL4 1123 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 MDP1Q86V88 176 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 KDM8Q8N371 416 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 TEX29Q8N6K0 151 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 C11orf65Q8NCR3 313 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 S100ZQ8WXG8 99 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 RPL3LQ92901 407 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 SLC25A36Q96CQ1 311 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 SYT3Q9BQG1 590 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 MRPL37Q9BZE1 423 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 WDR12Q9GZL7 423 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 CCDC90BQ9GZT6 254 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 NXF2Q9GZY0 626 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 TMEM38AQ9H6F2 299 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 CHCHD3Q9NX63 227 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 TREM2Q9NZC2 230 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 RCE1Q9Y256 329 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 LOC105371242A0A075B767 164 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 ZNF503-AS2A6NEH8 195 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 PPIHO43447 177 aaKnown RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 FAM20BO75063 409 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 SLC43A1O75387 559 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 AHSA1O95433 338 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 FADS2O95864 444 aaKnown RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 HPXP02790 462 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 GAAP10253 952 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 CD79AP11912 226 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 FUT4P22083 530 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 RPS4Y1P22090 263 aaKnown RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 RRM2P31350 389 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 ALDH3B1P43353 468 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 EVX1P49640 407 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 TMEM33P57088 247 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 RBBP4Q09028 425 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 C1DQ13901 141 aaKnown RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 TBCEQ15813 527 aaPredicted RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 DGUOKQ16854 277 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 CCDC36Q8IYA8 594 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 ATG16L2Q8NAA4 619 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 ZBTB8BQ8NAP8 495 aaPredicted RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 RDH5Q92781 318 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 GGHQ92820 318 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 SLC38A4Q969I6 547 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 LGALS12Q96DT0 336 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 ZNF837Q96EG3 531 aaPredicted RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 FEVQ99581 238 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 RSPO3Q9BXY4 272 aaPredicted RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 ARMC7Q9H6L4 198 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 GPR35Q9HC97 309 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 HMG20AQ9NP66 347 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 ZNF275Q9NSD4 429 aaPredicted RBP6.72□□□□□ -1.33
CLK1-215ENST00000621181 TGP01266 2768 aa6.72□□□□□ -1.33
CLK1-215ENST00000621181 TRAV20A0A0B4J274 112 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 METTL15A6NJ78 407 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 KPNA4O00629 521 aaPredicted RBP6.71□□□□□ -1.33
CLK1-215ENST00000621181 WNT9BO14905 357 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 HLA-HP01893 362 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 CDK1P06493 297 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 PNMTP11086 282 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 ETFAP13804 333 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 CD36P16671 472 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 CBLP22681 906 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 COL8A2P25067 703 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 PSMB9P28065 219 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 C21orf33P30042 268 aaPredicted RBP6.71□□□□□ -1.33
CLK1-215ENST00000621181 GRK5P34947 590 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 TGFBR1P36897 503 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 ACAA2P42765 397 aaKnown RBP6.71□□□□□ -1.33
CLK1-215ENST00000621181 RPS5P46782 204 aaKnown RBP6.71□□□□□ -1.33
CLK1-215ENST00000621181 GALK2Q01415 458 aa6.71□□□□□ -1.33
CLK1-215ENST00000621181 GSG1Q2KHT4 349 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms