RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 OR56A5P0C7T3 313 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 IGFBP5P24593 272 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 CXCR2P25025 360 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 CMPK1P30085 196 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 STIP1P31948 543 aaKnown RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 MAGEA1P43355 309 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 DNASE1L1P49184 302 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 HNRNPFP52597 415 aaKnown RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 UCP2P55851 309 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 OR4D2P58180 307 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 RAB8AP61006 207 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 TBPL1P62380 186 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 PLGLB1Q02325 96 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 TFF3Q07654 80 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 ACTN3Q08043 901 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 CD47Q08722 323 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 C17orf67Q0P5P2 114 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 RCN2Q14257 317 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 PRPSAP1Q14558 356 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 SLMAPQ14BN4 828 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 ZKSCAN8Q15776 578 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 DEFB134Q4QY38 66 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 PRAMEF20Q5VT98 475 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 AFTPHQ6ULP2 937 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 SLC26A11Q86WA9 606 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 CPNE9Q8IYJ1 553 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 KATNAL2Q8IYT4 538 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 TBC1D21Q8IYX1 336 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 H1FOOQ8IZA3 346 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF740Q8NDX6 193 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 OR2A1Q8NGT9 310 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 OR51Q1Q8NH59 317 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 RDH11Q8TC12 318 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 DTX3LQ8TDB6 740 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 RAB39BQ96DA2 213 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 JSRP1Q96MG2 331 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 TSNARE1Q96NA8 513 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 IP6K3Q96PC2 410 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 ALS2CR12Q96Q35 445 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 UTP23Q9BRU9 249 aaKnown RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 FUT8Q9BYC5 575 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 SLC25A39Q9BZJ4 359 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 AICDAQ9GZX7 198 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 DRC3Q9H069 523 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 MMADHCQ9H3L0 296 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 TRABDQ9H4I3 376 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 WDR54Q9H977 334 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 VPS37BQ9H9H4 285 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 PATZ1Q9HBE1 687 aaKnown RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 MRM3Q9HC36 420 aaKnown RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 CHRAC1Q9NRG0 131 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 PNO1Q9NRX1 252 aaKnown RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 ACOXLQ9NUZ1 547 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 C6orf203Q9P0P8 240 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 SPRR3Q9UBC9 169 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF223Q9UK11 482 aaPredicted RBP2.07□□□□□ -2.08
SCFD1-219ENST00000556413 FBXW2Q9UKT8 454 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 FAM215AQ9Y5M1 114 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 ALG6Q9Y672 507 aa2.07□□□□□ -2.08
SCFD1-219ENST00000556413 MDC1Q14676 2089 aaKnown RBP2.06□□□□□ -2.08
SCFD1-219ENST00000556413 ITPR3Q14573 2671 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 DIDO1Q9BTC0 2240 aaKnown RBP2.06□□□□□ -2.08
SCFD1-219ENST00000556413 PRRC2CQ9Y520 2896 aaKnown RBP2.06□□□□□ -2.08
SCFD1-219ENST00000556413 HEATR9A2RTY3 570 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 HACD1B0YJ81 288 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 GOLGA6L19H0YKK7 550 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 APOC4-APOC2K7ER74 178 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 SLC28A1O00337 649 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 PIAS1O75925 651 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 MYO1DO94832 1006 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 VAPBO95292 243 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 WISP3O95389 354 aaPredicted RBP2.06□□□□□ -2.08
SCFD1-219ENST00000556413 GUCA1CO95843 209 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 APOC2P02655 101 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 APRTP07741 180 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 CCL3P10147 92 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 PTNP21246 168 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 IMPA1P29218 277 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 CTNNA1P35221 906 aaKnown RBP2.06□□□□□ -2.08
SCFD1-219ENST00000556413 SLC26A3P40879 764 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 SLC1A2P43004 574 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 MAGEA5P43359 124 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 ALDH3B2P48448 385 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 CD151P48509 253 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 PPOXP50336 477 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 MLF1P58340 268 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 SLC26A5P58743 744 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 STX1BP61266 288 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 BASP1P80723 227 aaKnown RBP2.06□□□□□ -2.08
SCFD1-219ENST00000556413 CDKL1Q00532 357 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 RPA4Q13156 261 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 TFDP2Q14188 446 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 ITIH4Q14624 930 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 TMED2Q15363 201 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 NSDHLQ15738 373 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 NNATQ16517 81 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 KLHL38Q2WGJ6 581 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 IFI44LQ53G44 452 aa2.06□□□□□ -2.08
SCFD1-219ENST00000556413 DNAJC21Q5F1R6 531 aaKnown RBP2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms