RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PTH2RP49190 550 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 RAB25P57735 213 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 RRAS2P62070 204 aaPredicted RBP11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 CD83Q01151 205 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 RAB11BQ15907 218 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 STPG1Q5TH74 334 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 MTFR2Q6P444 385 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 CORO6Q6QEF8 472 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 TMPPEQ6ZT21 453 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 ARMC10Q8N2F6 343 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 OR13C3Q8NGS6 347 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 AKAP1Q92667 903 aaKnown RBP eCLIP11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 JSRP1Q96MG2 331 aaPredicted RBP11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 CACNG6Q9BXT2 260 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 G6PC2Q9NQR9 355 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 NUDT15Q9NV35 164 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 CYB5R1Q9UHQ9 305 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 TCFL5Q9UL49 500 aa11.53□□□□□ -0.56
SPTLC1-201ENST00000262554 ZDBF2Q9HCK1 2354 aa11.52□□□□□ -0.56
SPTLC1-201ENST00000262554 COL6A3P12111 3177 aa11.52□□□□□ -0.56
SPTLC1-201ENST00000262554 TRAV6A0A075B6T7 132 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 ZNF726A6NNF4 738 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 ZNF814B7Z6K7 855 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 SLC17A2O00624 439 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 EIF1AYO14602 144 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 TLX3O43711 291 aaPredicted RBP11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 GSTT2BP0CG30 244 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 UBCP0CG48 685 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 FSTP19883 344 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 TCN2P20062 427 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 OTX2P32243 289 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 DNASE1L1P49184 302 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 CCDC157Q569K6 752 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 BCL2L15Q5TBC7 163 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 TMEM244Q5VVB8 128 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 RAET1LQ5VY80 246 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 GLT8D1Q68CQ7 371 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 KLHL24Q6TFL4 600 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 RAB11FIP2Q7L804 512 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 PPP1R32Q7Z5V6 425 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 OR52I2Q8NH67 350 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 SLAMF6Q96DU3 332 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 LOXL4Q96JB6 756 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 GNRHR2Q96P88 292 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 TAAR9Q96RI9 348 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 BEX2Q9BXY8 128 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 C1orf198Q9H425 327 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 SEC61A2Q9H9S3 476 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 PROK2Q9HC23 129 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 ING3Q9NXR8 418 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 POLR1DQ9Y2S0 133 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 PCDHGA5Q9Y5G8 931 aa11.52□□□□□ -0.57
SPTLC1-201ENST00000262554 LOC107986453A0A1B0GWG9 222 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 LNP1A1A4G5 178 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 MT-ND4P03905 459 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 CSRP1P21291 193 aaKnown RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 DCTDP32321 178 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 EIF1AXP47813 144 aaKnown RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 MMP16P51512 607 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 TAS2R20P59543 309 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 RPS18P62269 152 aaKnown RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 MRPS15P82914 257 aaKnown RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 CARD17Q5XLA6 110 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 TIGD3Q6B0B8 471 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 NCCRP1Q6ZVX7 275 aaPredicted RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 TCTE3Q8IZS6 198 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 OR51D1Q8NGF3 324 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 OR2AJ1Q8NGZ0 328 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 CT55Q8WUE5 264 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 CAPSLQ8WWF8 208 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 NTNG2Q96CW9 530 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 SGCZQ96LD1 299 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 FYTTD1Q96QD9 318 aaKnown RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 TAS2R4Q9NYW5 299 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 MEGF11A6BM72 1044 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 NAP1L6A6NFF2 107 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 G3V3Y1 287 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 ACOT7O00154 380 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 XRCC3O43542 346 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 CBR3O75828 277 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 GLSO94925 669 aaPredicted RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 HPP00738 406 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 ITGA5P08648 1049 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 JMJD7P0C870 316 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 NR2C1P13056 603 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 ZNF17P17021 662 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 IGFBP3P17936 291 aaPredicted RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 POU3F4P49335 361 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 CHAF1BQ13112 559 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 SSPNQ14714 243 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 ANGPT1Q15389 498 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 SLC25A47Q6Q0C1 308 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 NOXA1Q86UR1 476 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 GCDHQ92947 438 aaPredicted RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 FAM3DQ96BQ1 224 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 TMEM41AQ96HV5 264 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 DDA1Q9BW61 102 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 DIABLOQ9NR28 239 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 ZNF275Q9NSD4 429 aaPredicted RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 MCUBQ9NWR8 336 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms