RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TMEM215Q68D42 235 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TSSK4Q6SA08 328 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM200AQ86VY9 491 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 LMNTD1Q8N9Z9 388 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 UBAC2Q8NBM4 344 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 KCNE4Q8WWG9 221 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 LYRM4Q9HD34 91 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 MKKSQ9NPJ1 570 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 KCNE3Q9Y6H6 103 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 NUDT21O43809 227 aaKnown RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 COX6B1P14854 86 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 KIAA1024LP59773 190 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 LRRC37A5PQ49AS3 106 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ARL9Q6T311 187 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TMCO2Q7Z6W1 182 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 SERPINA12Q8IW75 414 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 OR4C16Q8NGL9 310 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TSACCQ96A04 125 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 HIST1H2BAQ96A08 127 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 WDR89Q96FK6 387 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 OR2A5Q96R48 311 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 C2orf88Q9BSF0 95 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 RNF126Q9BV68 326 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 MFFQ9GZY8 342 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 C20orf141Q9NUB4 165 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 WNT6Q9Y6F9 365 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 P2RX6O15547 441 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ERI3O43414 337 aaKnown RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TUBG1P23258 451 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ACTBP60709 375 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ACTG1P63261 375 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 HYAL4Q2M3T9 481 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ARHGAP40Q5TG30 622 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 C11orf87Q6NUJ2 197 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 C12orf45Q8N5I9 185 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 LILRA3Q8N6C8 439 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 OR5M1Q8NGP8 315 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 WFIKKN2Q8TEU8 576 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM239Q8WW34 195 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 HIST1H2AAQ96QV6 131 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 MCHR1Q99705 422 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 NKX6-2Q9C056 277 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 GPR27Q9NS67 375 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ZFP57Q9NU63 452 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 GSKIPQ9P0R6 139 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 A0A087WWC5 75 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ARPC1BO15143 372 aaKnown RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 OR8U8P0C7N1 319 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 MAKP20794 623 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 RAD52P43351 418 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 SULT1A2P50226 295 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 CCR6P51684 374 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 PSMA6P60900 246 aaKnown RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 SPEM2Q0P670 501 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 C14orf28Q4W4Y0 310 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 DPY19L2P2Q6ZN68 376 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF101Q8IZC7 436 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 C1orf216Q8TAB5 229 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 PHOSPHO1Q8TCT1 267 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 RAB7BQ96AH8 199 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 MRM2Q9UI43 246 aaKnown RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 C14orf166Q9Y224 244 aaKnown RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 SMLR1H3BR10 107 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 PYCARD-AS1I3L0S3 204 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 K7EQS6 105 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF44P15621 663 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 EPCAMP16422 314 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 HTR5AP47898 357 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF260Q3ZCT1 412 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 MEX3DQ86XN8 651 aaKnown RBP4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ZADH2Q8N4Q0 377 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 RNF128Q8TEB7 428 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 DPF1Q92782 380 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 PEX11GQ96HA9 241 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TRIM2Q9C040 744 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 METTL7AQ9H8H3 244 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 GSN-AS1Q9NRJ2 163 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 PLA2G2EQ9NZK7 142 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 LPAR3Q9UBY5 353 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 CACFD1Q9UGQ2 172 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF281Q9Y2X9 895 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 LEFTY2O00292 366 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 IGHMP01871 453 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 CAV3P56539 151 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 DBPQ10586 325 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ELOCQ15369 112 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 MAML2Q8IZL2 1156 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ZPBPQ9BS86 351 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 IER2Q9BTL4 223 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OR51B6Q9H340 312 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 MED11Q9P086 117 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 FBXL2Q9UKC9 423 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM184BQ9Y519 407 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC22A7Q9Y694 548 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 CASP8AP2Q9UKL3 1982 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 A0A1B0GV50 99 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 A0A1W2PQ45 241 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 A0A1W2PQY0 241 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 CYR61O00622 381 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms