RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TBL1XR1Q9BZK7 514 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 NKX2-4Q9H2Z4 354 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 SEMA6CQ9H3T2 930 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ACKR4Q9NPB9 350 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 TMED7Q9Y3B3 224 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 EP300Q09472 2414 aaPredicted RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 BOD1L1Q8NFC6 3051 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 IGHV5-51A0A0C4DH38 117 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ACOT7O00154 380 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 OGG1O15527 345 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 KCNJ13O60928 360 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 LY86O95711 162 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 AGR2O95994 175 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ARFIP1P53367 373 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ACKR1Q16570 336 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 RAB12Q6IQ22 244 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 LCN10Q6JVE6 187 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 SSX9Q7RTT3 188 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 RNF113BQ8IZP6 322 aaKnown RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 SPAG16Q8N0X2 631 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 OR13C3Q8NGS6 347 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 FLVCR1-AS1Q8TAF5 88 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 NR4A3Q92570 626 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 LRRC46Q96FV0 321 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 FAM71F1Q96KD3 344 aaPredicted RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 INTS14Q96SY0 518 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 SSX3Q99909 188 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 SELENOIQ9C0D9 397 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 PTGES2Q9H7Z7 377 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 DHDHQ9UQ10 334 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 MRPS18BQ9Y676 258 aaKnown RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 LINC00862A6NCI5 91 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 GPR89AB7ZAQ6 455 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CLDN4O14493 209 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 PLRG1O43660 514 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 UPK3AO75631 287 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CTAG2O75638 210 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 SC5DO75845 299 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 UTS2O95399 124 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 GPR89BP0CG08 455 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CCINQ13939 588 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 GK2Q14410 553 aaPredicted RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 PDCD1Q15116 288 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 NSDHLQ15738 373 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 SSX2Q16385 188 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CLLU1Q5K131 121 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 HLA-DQA1Q5Y7H0 255 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 BRICD5Q6PL45 260 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 WDFY1Q8IWB7 410 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 SLC35F3Q8IY50 421 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 RNASE11Q8TAA1 199 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 SLC39A7Q92504 469 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 PMM1Q92871 262 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CCDC74AQ96AQ1 378 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 FGGYQ96C11 551 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ARL5BQ96KC2 179 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 KLHL15Q96M94 604 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CRB3Q9BUF7 120 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 EVA1AQ9H8M9 152 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 FBRSQ9HAH7 460 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 OPN4Q9UHM6 478 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 RALGAPA1Q6GYQ0 2036 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 PRR14LQ5THK1 2151 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 A0A087WUJ7 227 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 GGT3PA6NGU5 568 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 OR2AT4A6NND4 320 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CD14P08571 375 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 HOXD4P09016 255 aaPredicted RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 RNH1P13489 461 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 HNRNPA2B1P22626 353 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 ANOS1P23352 680 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 IL12BP29460 328 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 CBX5P45973 191 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 NPY4RP50391 375 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 AP3S2P59780 193 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 SRSF3P84103 164 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 ACSM1Q08AH1 577 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 RBM39Q14498 530 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 KIR2DS3Q14952 304 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 TGIF1Q15583 401 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 RAB11BQ15907 218 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 FAM209BQ5JX69 171 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ADAD2Q8NCV1 583 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 SLC26A10Q8NG04 563 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 MARC2Q969Z3 335 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 VSTM2LQ96N03 204 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 VRK1Q99986 396 aaPredicted RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 MED11Q9P086 117 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 MSRAQ9UJ68 235 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 GMEB2Q9UKD1 530 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 A0A0J9YY10 115 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 TMEM82A0PJX8 343 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ANKRD20A5PA0PJZ0 165 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 MPTX1A8MV57 137 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 FOXS1O43638 330 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 RENP00797 406 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ZNF14P17017 642 aaPredicted RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 S1PR1P21453 382 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 SFTPDP35247 375 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 S100A10P60903 97 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms