RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ARIH2OSQ8N7S6 290 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 CPEB3Q8NE35 698 aaKnown RBP16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 OR51A7Q8NH64 312 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 NSMAFQ92636 917 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 FAM162AQ96A26 154 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 HSH2DQ96JZ2 352 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 KCTD14Q9BQ13 255 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 ABCD2Q9UBJ2 740 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 TMEM5Q9Y2B1 443 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 TIMM10BQ9Y5J6 103 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 TRAV27A0A087WT01 109 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 LYNX1G3V0Z9 82 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 J3KTA2 159 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 PRSS23O95084 383 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 LYNX1P0DP58 116 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 ZNF32P17041 273 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 DRD4P21917 467 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 COL8A2P25067 703 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 PRDX6P30041 224 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 GDI2P50395 445 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 CDH15P55291 814 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 TEKQ02763 1124 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 FHL1Q13642 323 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 ZNF718Q3SXZ3 478 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 FOXL2NBQ6ZUU3 175 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 TREML1Q86YW5 311 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 POM121L2Q96KW2 1035 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 NMNAT1Q9HAN9 279 aaPredicted RBP16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 GMPR2Q9P2T1 348 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 FAM32AQ9Y421 112 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 ENPP4Q9Y6X5 453 aa16.32■□□□□ 0.2
CCDC28A-203ENST00000617445 IGKV1D-43A0A0B4J1Z2 117 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 A0A1W2PRQ8 180 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 B4DSR2 109 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 PHF1O43189 567 aaPredicted RBP16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 GMNNO75496 209 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 CLPTM1O96005 669 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 IGHV3-13P01766 116 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 TFP02787 698 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 PSME3P61289 254 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 PSG4Q00888 419 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 DGCR6Q14129 220 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 TRIP10Q15642 601 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 CR1LQ2VPA4 569 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 ZBED5Q49AG3 693 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 FAM209AQ5JX71 171 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 OR1J1Q8NGS3 322 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 TSPAN32Q96QS1 320 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 ELAC2Q9BQ52 826 aaKnown RBP16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 SOX7Q9BT81 388 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 RACGAP1Q9H0H5 632 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 MYLK2Q9H1R3 596 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 OR51B6Q9H340 312 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 GRHPRQ9UBQ7 328 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 DNHD1Q96M86 4753 aa16.31■□□□□ 0.2
CCDC28A-203ENST00000617445 C5orf49A4QMS7 147 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 C12orf71A8MTZ7 269 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 H3BSA7 217 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 XKRYO14609 159 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 ICMTO60725 284 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 CD14P08571 375 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 RHCEP18577 417 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 MSR1P21757 451 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 CCNOP22674 350 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 LAP3P28838 519 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 GCH1P30793 250 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 IL2RGP31785 369 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 RPL4P36578 427 aaKnown RBP16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 LIPAP38571 399 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 DVL1P1P54792 670 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 ARL9Q6T311 187 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 OR13C2Q8NGS9 318 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 OR2H1Q9GZK4 316 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 ELOVL3Q9HB03 270 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 SPAG4Q9NPE6 437 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 ZNF275Q9NSD4 429 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 TMEFF2Q9UIK5 374 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 CUBNO60494 3623 aa16.3■□□□□ 0.2
CCDC28A-203ENST00000617445 LOC100509620A0A075B734 347 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 RP2O75695 350 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 NCR1O76036 304 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 H1F0P07305 194 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 FUT4P22083 530 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 TUBG1P23258 451 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 ERVS71-1P61550 626 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 ERVK-25P63136 954 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 GLYATQ6IB77 296 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 TBPL2Q6SJ96 375 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 IGFN1Q86VF2 1251 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 ICA1LQ8NDH6 482 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 SLC7A13Q8TCU3 470 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 YIPF5Q969M3 257 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 NSRP1Q9H0G5 558 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 KRCC1Q9NPI7 259 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 TUBG2Q9NRH3 451 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 CYSLTR2Q9NS75 346 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 DECR2Q9NUI1 292 aa16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 CGGBP1Q9UFW8 167 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 SAMD4AQ9UPU9 718 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-203ENST00000617445 SVEP1Q4LDE5 3571 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms