RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 OTPQ5XKR4 325 aa25.88■■□□□ 1.73
LIMCH1-211ENST00000509638 OR6K6Q8NGW6 343 aa25.88■■□□□ 1.73
LIMCH1-211ENST00000509638 SPOCK3Q9BQ16 436 aa25.88■■□□□ 1.73
LIMCH1-211ENST00000509638 OR51V1Q9H2C8 321 aa25.88■■□□□ 1.73
LIMCH1-211ENST00000509638 EMC7Q9NPA0 242 aa25.88■■□□□ 1.73
LIMCH1-211ENST00000509638 SLC16A6O15403 523 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 MPZL1O95297 269 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 HLA-HP01893 362 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 SCG5P05408 212 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 AQP4P55087 323 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 EFNB1P98172 346 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 SEZ6L2Q6UXD5 910 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 SLC16A14Q7RTX9 510 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 ZSCAN2Q7Z7L9 614 aaPredicted RBP25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 SLC26A10Q8NG04 563 aa25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 NANOS1Q8WY41 292 aaKnown RBP25.87■■□□□ 1.73
LIMCH1-211ENST00000509638 HOXB1P14653 301 aaPredicted RBP25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 COL8A1P27658 744 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 KEAP1Q14145 624 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 KLHL12Q53G59 568 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 FAM27BQ5VT28 67 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 LYPD4Q6UWN0 246 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 CCDC36Q8IYA8 594 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 ADI1Q9BV57 179 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 ZNF226Q9NYT6 803 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 PRODHO43272 600 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 WNT11O96014 354 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 HLA-DQA2P01906 255 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 CD79AP11912 226 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 MEP1BQ16820 701 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 SP5Q6BEB4 398 aaPredicted RBP25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 UGT2A3Q6UWM9 527 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 BCDIN3DQ7Z5W3 292 aaKnown RBP25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 OR8J1Q8NGP2 316 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 FAM222BQ8WU58 562 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 C11orf40Q8WZ69 217 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 NOX3Q9HBY0 568 aa25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 HRNRQ86YZ3 2850 aaPredicted RBP25.86■■□□□ 1.73
LIMCH1-211ENST00000509638 PATE4P0C8F1 98 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 COX6B1P14854 86 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 HSF2Q03933 536 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 SSX8Q7RTT4 187 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 DHRSXQ8N5I4 330 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 FGFBP3Q8TAT2 258 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 ZNF416Q9BWM5 594 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 SLC24A3Q9HC58 644 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 NPAP1Q9NZP6 1156 aa25.85■■□□□ 1.73
LIMCH1-211ENST00000509638 UBL3O95164 117 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 TFP02787 698 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 EPXP11678 715 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 SLC2A5P22732 501 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 PIGFQ07326 219 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 ENDOGQ14249 297 aaKnown RBP25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 GSG1Q2KHT4 349 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 SLC36A2Q495M3 483 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 LINC01590Q5TEZ4 76 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 MDP1Q86V88 176 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 UBE2FQ969M7 185 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 C1QTNF6Q9BXI9 259 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 MRPL22Q9NWU5 206 aaKnown RBP25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 POLR1DQ9Y2S0 133 aa25.84■■□□□ 1.73
LIMCH1-211ENST00000509638 TVP23AA6NH52 213 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 GLCEO94923 617 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 CST2P09228 141 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 ZNF83P51522 516 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 RPS7P62081 194 aaKnown RBP25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 APOFQ13790 326 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 C1QTNF12Q5T7M4 302 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 TTC23Q5W5X9 447 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 IZUMO2Q6UXV1 221 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 DEPDC4Q8N2C3 294 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 FBXO17Q96EF6 278 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 KCNN2Q9H2S1 579 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 B3GNT2Q9NY97 397 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 MOKQ9UQ07 419 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 COMMD3-BMI1R4GMX3 469 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 CELSR2Q9HCU4 2923 aa25.83■■□□□ 1.73
LIMCH1-211ENST00000509638 CLIC3O95833 236 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 CRYGSP22914 178 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 FMO3P31513 532 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 ADARB1P78563 741 aaKnown RBP25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 TEKQ02763 1124 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 KCNMB1Q16558 191 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 AADACL4Q5VUY2 407 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 NXNL2Q5VZ03 156 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 OR10H5Q8NGA6 315 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 TRUB1Q8WWH5 349 aaKnown RBP25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 ZMYND19Q96E35 227 aaPredicted RBP25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 DNAJC27Q9NZQ0 273 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 H0YJX3 145 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 CASKO14936 926 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 CAPGP40121 348 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 VHLP40337 213 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 LSM6P62312 80 aaKnown RBP25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 DPPA2Q7Z7J5 298 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 ENTHD1Q8IYW4 607 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 ZNF511Q8NB15 262 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 APOL4Q9BPW4 351 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 CCNB1IP1Q9NPC3 277 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 RASSF1Q9NS23 344 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms