RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 NSMAFQ92636 917 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 GHSRQ92847 366 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 CPNE4Q96A23 557 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-214ENST00000495485 KCTD12Q96CX2 325 aaKnown RBP9.15□□□□□ -0.94
HDAC3-214ENST00000495485 NPAS1Q99742 590 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 TM9SF2Q99805 663 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.15□□□□□ -0.94
HDAC3-214ENST00000495485 TPK1Q9H3S4 243 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 TMEM185BQ9H7F4 350 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 B3GAT2Q9NPZ5 323 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 COA3Q9Y2R0 106 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-214ENST00000495485 ZNF281Q9Y2X9 895 aa9.15□□□□□ -0.94
HDAC3-214ENST00000495485 ZNF407Q9C0G0 2248 aa9.15□□□□□ -0.95
HDAC3-214ENST00000495485 TRAV1-2A0A0B4J238 106 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SLC35F4A4IF30 521 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 B4DXG7 233 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 EIF1AYO14602 144 aaKnown RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SYNGR4O95473 234 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 CRYABP02511 175 aaKnown RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 HPNP05981 417 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SPARCP09486 303 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 INHBBP09529 407 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 HLA-DOBP13765 273 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 ZNF12P17014 697 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 CALRP27797 417 aaKnown RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 TGFBR1P36897 503 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 CD79BP40259 229 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 OPRL1P41146 370 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 CD97P48960 835 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 PSMD7P51665 324 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 CCR9P51686 369 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 HCCSP53701 268 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 PPP3R1P63098 170 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 H3F3AP84243 136 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 EIF2B1Q14232 305 aaKnown RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 ACSM3Q53FZ2 586 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SOWAHCQ53LP3 525 aaPredicted RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 DDI2Q5TDH0 399 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SPINK14Q6IE38 97 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 FDX2Q6P4F2 183 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 RHOUQ7L0Q8 258 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SSX6Q7RTT6 188 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 CEACAM19Q7Z692 300 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 YRDCQ86U90 279 aaKnown RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SLC22A16Q86VW1 577 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 KDM8Q8N371 416 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 MEIOBQ8N635 442 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SYT14Q8NB59 555 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 MINDY2Q8NBR6 621 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 MDS2Q8NDY4 140 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 OR6N1Q8NGY5 312 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SCMH1Q96GD3 660 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 OR8B4Q96RC9 309 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 TIMP4Q99727 224 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SH3GL3Q99963 347 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 KCNS3Q9BQ31 491 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 MRI1Q9BV20 369 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 RNF167Q9H6Y7 350 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 NIPAL2Q9H841 368 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SLC24A3Q9HC58 644 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SMURF1Q9HCE7 757 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 ZNF71Q9NQZ8 489 aaPredicted RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 MED29Q9NX70 200 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 ST6GALNAC2Q9UJ37 374 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 COPS3Q9UNS2 423 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 POLR1DQ9Y2S0 133 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 CMAHPQ9Y471 501 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SHANK1Q9Y566 2161 aa9.14□□□□□ -0.95
HDAC3-214ENST00000495485 SPTBN1Q01082 2364 aaKnown RBP9.14□□□□□ -0.95
HDAC3-214ENST00000495485 DIDO1Q9BTC0 2240 aaKnown RBP9.13□□□□□ -0.95
HDAC3-214ENST00000495485 FREM3P0C091 2139 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 CD8B2A6NJW9 211 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 MASP2O00187 686 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 DCTN6O00399 190 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 GPR171O14626 319 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 TNFSF11O14788 317 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 NME2P1O60361 137 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 SLC19A2O60779 497 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 NEURL1O76050 574 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 WISP1O95388 367 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 OPN1LWP04000 364 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 RAF1P04049 648 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 PGA4P0DJD7 388 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 PGA3P0DJD8 388 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 CD8BP10966 210 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 CTLA4P16410 223 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 NME2P22392 152 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 PTGS2P35354 604 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 CSNK1A1P48729 337 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 ZNF84P51523 738 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 P2RY4P51582 365 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 CLDN17P56750 224 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 ROM1Q03395 351 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 MXD1Q05195 221 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 HNRNPA0Q13151 305 aaKnown RBP9.13□□□□□ -0.95
HDAC3-214ENST00000495485 SLC10A1Q14973 349 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 BCL2A1Q16548 175 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 ZNF181Q2M3W8 571 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 ZNF766Q5HY98 468 aa9.13□□□□□ -0.95
HDAC3-214ENST00000495485 WIPI1Q5MNZ9 446 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms