RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SLC35D2Q76EJ3 337 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 TMEM178AQ8NBL3 297 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 KCTD12Q96CX2 325 aaKnown RBP20.17■□□□□ 0.82
CDX1-201ENST00000231656 FOXN4Q96NZ1 517 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 OR14A2Q96R54 314 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 KCNK17Q96T54 332 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 TTTY12Q9BZ98 90 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 TMEM185BQ9H7F4 350 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 ZNF703Q9H7S9 590 aaPredicted RBP20.17■□□□□ 0.82
CDX1-201ENST00000231656 B3GAT1Q9P2W7 334 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 ZNF281Q9Y2X9 895 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 MRPS18CQ9Y3D5 142 aaKnown RBP20.17■□□□□ 0.82
CDX1-201ENST00000231656 CHD8Q9HCK8 2581 aa20.17■□□□□ 0.82
CDX1-201ENST00000231656 CACNA1GO43497 2377 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 ZNF593O00488 134 aaPredicted RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 ARL6IP5O75915 188 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 RPP14O95059 124 aaKnown RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 ZFPL1O95159 310 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 ZNF17P17021 662 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 CRABP1P29762 137 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 CD97P48960 835 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 P2RY4P51582 365 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 BAK1Q16611 211 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 LRRC69Q6ZNQ3 347 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 YRDCQ86U90 279 aaKnown RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 OR14L1PQ8NHC6 308 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 SLC25A43Q8WUT9 341 aaPredicted RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 THEM6Q8WUY1 208 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 PHYHIPQ92561 330 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 PIGQQ9BRB3 760 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 MFRPQ9BY79 579 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 ING1Q9UK53 422 aaPredicted RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 PCDHGA9Q9Y5G4 932 aaKnown RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 TRAPPC6AO75865 159 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 HLA-DQA2P01906 255 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 PTGS2P35354 604 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 EVX1P49640 407 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 B3GALT5-AS1P59052 145 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 ALKBH1Q13686 389 aaKnown RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 YIF1BQ5BJH7 314 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 OTPQ5XKR4 325 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 METAP1DQ6UB28 335 aaPredicted RBP20.16■□□□□ 0.82
CDX1-201ENST00000231656 GDPD1Q8N9F7 314 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 PPP1R14BQ96C90 147 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 TXNDC15Q96J42 360 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 TIGARQ9NQ88 270 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 RHBDL2Q9NX52 303 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 SLCO1C1Q9NYB5 712 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 B4GALT7Q9UBV7 327 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 IKZF2Q9UKS7 526 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 TBC1D24Q9ULP9 559 aa20.16■□□□□ 0.82
CDX1-201ENST00000231656 BOD1L1Q8NFC6 3051 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 A0A087WV48 116 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 A0A1W2PPK0 400 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 HSPB2A8KAH6 182 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 OPN1LWP04000 364 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 IL7P13232 177 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 RAB3BP20337 219 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 DEFA1P59665 94 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 DEFA3P59666 94 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 HSPB2Q16082 182 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 CEP78Q5JTW2 689 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 PNPLA5Q7Z6Z6 429 aaPredicted RBP20.15■□□□□ 0.82
CDX1-201ENST00000231656 ZFP62Q8NB50 900 aaPredicted RBP20.15■□□□□ 0.82
CDX1-201ENST00000231656 OR5B2Q96R09 309 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 OR8B4Q96RC9 309 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 OR2B2Q9GZK3 357 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 MED29Q9NX70 200 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 ETAA1Q9NY74 926 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 FRRS1LQ9P0K9 344 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 KLHL13Q9P2N7 655 aa20.15■□□□□ 0.82
CDX1-201ENST00000231656 COA3Q9Y2R0 106 aaPredicted RBP20.15■□□□□ 0.82
CDX1-201ENST00000231656 A0A1W2PNR3 127 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 PIN1P1O15428 100 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 SLC19A2O60779 497 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 GLSO94925 669 aaPredicted RBP20.14■□□□□ 0.81
CDX1-201ENST00000231656 SPNP16150 400 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 FKBP2P26885 142 aaKnown RBP20.14■□□□□ 0.81
CDX1-201ENST00000231656 ZNF239Q16600 458 aaKnown RBP20.14■□□□□ 0.81
CDX1-201ENST00000231656 SLC25A35Q3KQZ1 300 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 IGFL3Q6UXB1 125 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 SNRNP27Q8WVK2 155 aaKnown RBP20.14■□□□□ 0.81
CDX1-201ENST00000231656 ASB17Q8WXJ9 295 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 ZCCHC4Q9H5U6 513 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 PPP1R3EQ9H7J1 279 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 ADAM30Q9UKF2 790 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 RASD1Q9Y272 281 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 HDGFL3Q9Y3E1 203 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 ATMQ13315 3056 aa20.14■□□□□ 0.81
CDX1-201ENST00000231656 CENPBD1B2RD01 187 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 C1QTNF9BB2RNN3 333 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 ZNF879B4DU55 563 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 TMCC2O75069 709 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 C1QTNF9P0C862 333 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 SFTPDP35247 375 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 TMPRSS3P57727 454 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 OR2B6P58173 313 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 PLGLB1Q02325 96 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 GLO1Q04760 184 aa20.13■□□□□ 0.81
CDX1-201ENST00000231656 FMODQ06828 376 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms