RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CDC45O75419 566 aa24.59■■□□□ 1.53
CLN3-250ENST00000636839 STK32BQ9NY57 414 aa24.59■■□□□ 1.53
CLN3-250ENST00000636839 TAF5LO75529 589 aa24.59■■□□□ 1.53
CLN3-250ENST00000636839 GLRX3O76003 335 aaKnown RBP24.59■■□□□ 1.53
CLN3-250ENST00000636839 MFAP1P55081 439 aaKnown RBP24.59■■□□□ 1.53
CLN3-250ENST00000636839 FLAD1Q8NFF5 587 aa24.59■■□□□ 1.53
CLN3-250ENST00000636839 GPR108Q9NPR9 543 aa24.59■■□□□ 1.53
CLN3-250ENST00000636839 TNRC6CQ9HCJ0 1690 aaKnown RBP24.59■■□□□ 1.53
CLN3-250ENST00000636839 ZNF609O15014 1411 aa24.58■■□□□ 1.53
CLN3-250ENST00000636839 SLC51AQ86UW1 340 aa24.58■■□□□ 1.53
CLN3-250ENST00000636839 NLGN1Q8N2Q7 840 aa24.58■■□□□ 1.53
CLN3-250ENST00000636839 GPATCH3Q96I76 525 aa24.58■■□□□ 1.53
CLN3-250ENST00000636839 CASZ1Q86V15 1759 aa24.58■■□□□ 1.52
CLN3-250ENST00000636839 IGHMBP2P38935 993 aaKnown RBP24.57■■□□□ 1.52
CLN3-250ENST00000636839 ERC2O15083 957 aa24.57■■□□□ 1.52
CLN3-250ENST00000636839 WTIPA6NIX2 430 aaPredicted RBP24.56■■□□□ 1.52
CLN3-250ENST00000636839 EDC3Q96F86 508 aaKnown RBP24.56■■□□□ 1.52
CLN3-250ENST00000636839 LRP5O75197 1615 aa24.56■■□□□ 1.52
CLN3-250ENST00000636839 PDE8BO95263 885 aa24.56■■□□□ 1.52
CLN3-250ENST00000636839 MMP10P09238 476 aa24.56■■□□□ 1.52
CLN3-250ENST00000636839 XAGE2Q96GT9 111 aa24.56■■□□□ 1.52
CLN3-250ENST00000636839 CDC5LQ99459 802 aaKnown RBP24.56■■□□□ 1.52
CLN3-250ENST00000636839 SPEF2Q9C093 1822 aa24.55■■□□□ 1.52
CLN3-250ENST00000636839 ANKRD18AQ8IVF6 992 aa24.55■■□□□ 1.52
CLN3-250ENST00000636839 ATP2B3Q16720 1220 aa24.54■■□□□ 1.52
CLN3-250ENST00000636839 ATP5JP18859 108 aa24.54■■□□□ 1.52
CLN3-250ENST00000636839 AKAP2Q9Y2D5 859 aa24.54■■□□□ 1.52
CLN3-250ENST00000636839 MROH5Q6ZUA9 1318 aa24.53■■□□□ 1.52
CLN3-250ENST00000636839 ST5P78524 1137 aa24.53■■□□□ 1.52
CLN3-250ENST00000636839 CHRNDQ07001 517 aa24.53■■□□□ 1.52
CLN3-250ENST00000636839 RPS8P62241 208 aaKnown RBP24.52■■□□□ 1.52
CLN3-250ENST00000636839 CHMLP26374 656 aa24.52■■□□□ 1.52
CLN3-250ENST00000636839 DDX46Q7L014 1031 aaKnown RBP24.51■■□□□ 1.51
CLN3-250ENST00000636839 BSDC1Q9NW68 430 aaPredicted RBP24.51■■□□□ 1.51
CLN3-250ENST00000636839 CNTROBQ8N137 903 aa24.51■■□□□ 1.51
CLN3-250ENST00000636839 IL25Q9H293 177 aa24.51■■□□□ 1.51
CLN3-250ENST00000636839 MINPP1Q9UNW1 487 aa24.51■■□□□ 1.51
CLN3-250ENST00000636839 FGFR2P21802 821 aa24.5■■□□□ 1.51
CLN3-250ENST00000636839 DNAJC2Q99543 621 aaKnown RBP24.5■■□□□ 1.51
CLN3-250ENST00000636839 GORABQ5T7V8 394 aa24.49■■□□□ 1.51
CLN3-250ENST00000636839 SCARF1Q14162 830 aa24.49■■□□□ 1.51
CLN3-250ENST00000636839 PUM3Q15397 648 aaKnown RBP24.49■■□□□ 1.51
CLN3-250ENST00000636839 CRY2Q49AN0 593 aa24.49■■□□□ 1.51
CLN3-250ENST00000636839 PARP3Q9Y6F1 533 aa24.48■■□□□ 1.51
CLN3-250ENST00000636839 CHGBP05060 677 aa24.47■■□□□ 1.51
CLN3-250ENST00000636839 HAUS7Q99871 368 aa24.47■■□□□ 1.51
CLN3-250ENST00000636839 SNRKQ9NRH2 765 aa24.47■■□□□ 1.51
CLN3-250ENST00000636839 PI16Q6UXB8 463 aa24.47■■□□□ 1.51
CLN3-250ENST00000636839 CCDC125Q86Z20 511 aa24.47■■□□□ 1.51
CLN3-250ENST00000636839 EVI5LQ96CN4 794 aa24.47■■□□□ 1.51
CLN3-250ENST00000636839 LPIN2Q92539 896 aa24.46■■□□□ 1.51
CLN3-250ENST00000636839 RPGRQ92834 1020 aaKnown RBP24.46■■□□□ 1.51
CLN3-250ENST00000636839 PHKA1P46020 1223 aa24.45■■□□□ 1.51
CLN3-250ENST00000636839 TTC39AQ5SRH9 613 aa24.45■■□□□ 1.51
CLN3-250ENST00000636839 IFIT1P09914 478 aaKnown RBP24.45■■□□□ 1.5
CLN3-250ENST00000636839 GRAPQ13588 217 aa24.45■■□□□ 1.5
CLN3-250ENST00000636839 CCDC158Q5M9N0 1113 aa24.45■■□□□ 1.5
CLN3-250ENST00000636839 CASC1Q6TDU7 716 aa24.45■■□□□ 1.5
CLN3-250ENST00000636839 GRAPLQ8TC17 118 aaPredicted RBP24.45■■□□□ 1.5
CLN3-250ENST00000636839 TBC1D32Q96NH3 1257 aa24.45■■□□□ 1.5
CLN3-250ENST00000636839 ESYT1Q9BSJ8 1104 aa24.45■■□□□ 1.5
CLN3-250ENST00000636839 C22orf23Q9BZE7 217 aa24.44■■□□□ 1.5
CLN3-250ENST00000636839 ANTXR1Q9H6X2 564 aa24.44■■□□□ 1.5
CLN3-250ENST00000636839 UPF2Q9HAU5 1272 aaKnown RBP24.44■■□□□ 1.5
CLN3-250ENST00000636839 KLRG2A4D1S0 409 aaPredicted RBP24.44■■□□□ 1.5
CLN3-250ENST00000636839 GOLIM4O00461 696 aa24.44■■□□□ 1.5
CLN3-250ENST00000636839 CCDC102BQ68D86 513 aa24.44■■□□□ 1.5
CLN3-250ENST00000636839 BRIP1Q9BX63 1249 aa24.44■■□□□ 1.5
CLN3-250ENST00000636839 FKBP4Q02790 459 aaKnown RBP eCLIP24.43■■□□□ 1.5
CLN3-250ENST00000636839 CWC27Q6UX04 472 aaKnown RBP24.43■■□□□ 1.5
CLN3-250ENST00000636839 FSD1Q9BTV5 496 aa24.43■■□□□ 1.5
CLN3-250ENST00000636839 AK9Q5TCS8 1911 aa24.43■■□□□ 1.5
CLN3-250ENST00000636839 SLC5A1P13866 664 aa24.42■■□□□ 1.5
CLN3-250ENST00000636839 BCAMP50895 628 aa24.42■■□□□ 1.5
CLN3-250ENST00000636839 NRXN2Q9P2S2 1712 aa24.42■■□□□ 1.5
CLN3-250ENST00000636839 ANKRD31Q8N7Z5 1873 aa24.42■■□□□ 1.5
CLN3-250ENST00000636839 KLRK1P26718 216 aa24.42■■□□□ 1.5
CLN3-250ENST00000636839 MCAMP43121 646 aa24.42■■□□□ 1.5
CLN3-250ENST00000636839 SLFNL1Q499Z3 407 aa24.42■■□□□ 1.5
CLN3-250ENST00000636839 UPF1Q92900 1129 aaKnown RBP eCLIP24.42■■□□□ 1.5
CLN3-250ENST00000636839 RBM17Q96I25 401 aaKnown RBP24.41■■□□□ 1.5
CLN3-250ENST00000636839 FAM227BQ96M60 508 aa24.41■■□□□ 1.5
CLN3-250ENST00000636839 PAG1Q9NWQ8 432 aa24.41■■□□□ 1.5
CLN3-250ENST00000636839 ZAP70P43403 619 aa24.4■■□□□ 1.5
CLN3-250ENST00000636839 HOXA10P31260 410 aaPredicted RBP24.4■■□□□ 1.5
CLN3-250ENST00000636839 USP26Q9BXU7 913 aa24.4■■□□□ 1.5
CLN3-250ENST00000636839 GYG1P46976 350 aa24.39■■□□□ 1.5
CLN3-250ENST00000636839 DIAPH3Q9NSV4 1193 aa24.39■■□□□ 1.5
CLN3-250ENST00000636839 QSER1Q2KHR3 1735 aa24.39■■□□□ 1.49
CLN3-250ENST00000636839 SRGNP10124 158 aa24.39■■□□□ 1.49
CLN3-250ENST00000636839 ANP32AP39687 249 aaKnown RBP24.38■■□□□ 1.49
CLN3-250ENST00000636839 NMIQ13287 307 aaPredicted RBP24.38■■□□□ 1.49
CLN3-250ENST00000636839 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.38■■□□□ 1.49
CLN3-250ENST00000636839 IQSEC3Q9UPP2 1182 aaPredicted RBP24.38■■□□□ 1.49
CLN3-250ENST00000636839 A0A1B0GUL6 1792 aa24.37■■□□□ 1.49
CLN3-250ENST00000636839 A0A0D9SFI3 127 aa24.37■■□□□ 1.49
CLN3-250ENST00000636839 SGSM2O43147 1006 aa24.37■■□□□ 1.49
CLN3-250ENST00000636839 UBE4AQ14139 1066 aa24.37■■□□□ 1.49
CLN3-250ENST00000636839 GOLGB1Q14789 3259 aaKnown RBP24.36■■□□□ 1.49
CLN3-250ENST00000636839 OLFM4Q6UX06 510 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms