RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 KCNQ5Q9NR82 932 aa20.36■□□□□ 0.85
PDLIM3-213ENST00000629667 COL4A1P02462 1669 aa20.35■□□□□ 0.85
PDLIM3-213ENST00000629667 IRS4O14654 1257 aaPredicted RBP20.35■□□□□ 0.85
PDLIM3-213ENST00000629667 RPS8P62241 208 aaKnown RBP20.35■□□□□ 0.85
PDLIM3-213ENST00000629667 TBC1D16Q8TBP0 767 aa20.35■□□□□ 0.85
PDLIM3-213ENST00000629667 ZC3H12CQ9C0D7 883 aaKnown RBP20.35■□□□□ 0.85
PDLIM3-213ENST00000629667 HYPKQ9NX55 129 aa20.35■□□□□ 0.85
PDLIM3-213ENST00000629667 RTL9Q8NET4 1388 aa20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 SCN9AQ15858 1988 aa20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 FAM155AB1AL88 458 aaPredicted RBP20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 G3V3G9 751 aa20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 ZNF157P51786 506 aaPredicted RBP20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 KIF4BQ2VIQ3 1234 aa20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 DCAF8Q5TAQ9 597 aa20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 SULF1Q8IWU6 871 aa20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 TRIM35Q9UPQ4 493 aa20.34■□□□□ 0.85
PDLIM3-213ENST00000629667 KIF23Q02241 960 aaPredicted RBP20.33■□□□□ 0.85
PDLIM3-213ENST00000629667 RUNDC1Q96C34 613 aa20.33■□□□□ 0.85
PDLIM3-213ENST00000629667 SAGE1Q9NXZ1 904 aa20.33■□□□□ 0.85
PDLIM3-213ENST00000629667 TRIM28Q13263 835 aaKnown RBP20.32■□□□□ 0.84
PDLIM3-213ENST00000629667 GGA3Q9NZ52 723 aa20.32■□□□□ 0.84
PDLIM3-213ENST00000629667 VIL1P09327 827 aaKnown RBP20.31■□□□□ 0.84
PDLIM3-213ENST00000629667 HSP90B1P14625 803 aaKnown RBP20.31■□□□□ 0.84
PDLIM3-213ENST00000629667 WDR43Q15061 677 aaKnown RBP eCLIP20.31■□□□□ 0.84
PDLIM3-213ENST00000629667 DUSP27Q5VZP5 1158 aa20.31■□□□□ 0.84
PDLIM3-213ENST00000629667 RIC3Q7Z5B4 369 aa20.31■□□□□ 0.84
PDLIM3-213ENST00000629667 PODXL2Q9NZ53 605 aa20.31■□□□□ 0.84
PDLIM3-213ENST00000629667 ANKIB1Q9P2G1 1089 aa20.31■□□□□ 0.84
PDLIM3-213ENST00000629667 TRPA1O75762 1119 aa20.3■□□□□ 0.84
PDLIM3-213ENST00000629667 UFL1O94874 794 aa20.3■□□□□ 0.84
PDLIM3-213ENST00000629667 ZBTB38Q8NAP3 1195 aaPredicted RBP20.3■□□□□ 0.84
PDLIM3-213ENST00000629667 RNF186Q9NXI6 227 aa20.3■□□□□ 0.84
PDLIM3-213ENST00000629667 MYBBP1AQ9BQG0 1328 aaKnown RBP20.29■□□□□ 0.84
PDLIM3-213ENST00000629667 GOLGA2Q08379 1002 aa20.29■□□□□ 0.84
PDLIM3-213ENST00000629667 SEC31BQ9NQW1 1179 aa20.29■□□□□ 0.84
PDLIM3-213ENST00000629667 GGA1Q9UJY5 639 aa20.29■□□□□ 0.84
PDLIM3-213ENST00000629667 PSME4Q14997 1843 aa20.29■□□□□ 0.84
PDLIM3-213ENST00000629667 SLC10A3P09131 477 aa20.28■□□□□ 0.84
PDLIM3-213ENST00000629667 CDCA5Q96FF9 252 aa20.28■□□□□ 0.84
PDLIM3-213ENST00000629667 ASTN2O75129 1339 aaPredicted RBP20.27■□□□□ 0.84
PDLIM3-213ENST00000629667 CCDC152Q4G0S7 254 aa20.27■□□□□ 0.84
PDLIM3-213ENST00000629667 ANGEL2Q5VTE6 544 aaKnown RBP20.27■□□□□ 0.84
PDLIM3-213ENST00000629667 AGBL3Q8NEM8 1001 aa20.27■□□□□ 0.84
PDLIM3-213ENST00000629667 TNRC18O15417 2968 aaPredicted RBP20.26■□□□□ 0.83
PDLIM3-213ENST00000629667 SCARF1Q14162 830 aa20.26■□□□□ 0.83
PDLIM3-213ENST00000629667 RSBN1LQ6PCB5 846 aaPredicted RBP20.26■□□□□ 0.83
PDLIM3-213ENST00000629667 CSRNP1Q96S65 589 aa20.26■□□□□ 0.83
PDLIM3-213ENST00000629667 MYD88Q99836 296 aa20.26■□□□□ 0.83
PDLIM3-213ENST00000629667 MBIPQ9NS73 344 aa20.26■□□□□ 0.83
PDLIM3-213ENST00000629667 ZNF280AP59817 542 aaPredicted RBP20.25■□□□□ 0.83
PDLIM3-213ENST00000629667 REM2Q8IYK8 340 aaPredicted RBP20.25■□□□□ 0.83
PDLIM3-213ENST00000629667 PHAXQ9H814 394 aaKnown RBP20.25■□□□□ 0.83
PDLIM3-213ENST00000629667 ADAMTS8Q9UP79 889 aa20.25■□□□□ 0.83
PDLIM3-213ENST00000629667 PDE8AO60658 829 aa20.24■□□□□ 0.83
PDLIM3-213ENST00000629667 CCDC191Q8NCU4 936 aa20.24■□□□□ 0.83
PDLIM3-213ENST00000629667 CCDC85AQ96PX6 553 aaPredicted RBP20.24■□□□□ 0.83
PDLIM3-213ENST00000629667 ZNF609O15014 1411 aa20.24■□□□□ 0.83
PDLIM3-213ENST00000629667 PAPPA2Q9BXP8 1791 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 PCCAP05165 728 aaPredicted RBP20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 USP17L8P0C7I0 530 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 SOX10P56693 466 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 FKBP1BP68106 108 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 RASAL3Q86YV0 1011 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 ANKRD18AQ8IVF6 992 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 MYOZ2Q9NPC6 264 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 CWC25Q9NXE8 425 aaPredicted RBP20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 XDHP47989 1333 aa20.23■□□□□ 0.83
PDLIM3-213ENST00000629667 ELL2O00472 640 aaPredicted RBP20.22■□□□□ 0.83
PDLIM3-213ENST00000629667 JARID2Q92833 1246 aaPredicted RBP20.22■□□□□ 0.83
PDLIM3-213ENST00000629667 USP17L3A6NCW0 530 aa20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 USP17L4A6NCW7 530 aa20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 ATP2B4P23634 1241 aa20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 DDX10Q13206 875 aaKnown RBP20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 USP17L1Q7RTZ2 530 aa20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 PODNQ7Z5L7 613 aa20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 CTU1Q7Z7A3 348 aaKnown RBP20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 PITPNM2Q9BZ72 1349 aa20.21■□□□□ 0.83
PDLIM3-213ENST00000629667 SPEF2Q9C093 1822 aa20.2■□□□□ 0.82
PDLIM3-213ENST00000629667 DDX58O95786 925 aaKnown RBP20.2■□□□□ 0.82
PDLIM3-213ENST00000629667 ZNF853P0CG23 659 aa20.2■□□□□ 0.82
PDLIM3-213ENST00000629667 GMLQ99445 158 aa20.2■□□□□ 0.82
PDLIM3-213ENST00000629667 PDE4DIPQ5VU43 2346 aa20.2■□□□□ 0.82
PDLIM3-213ENST00000629667 MYH3P11055 1940 aa20.19■□□□□ 0.82
PDLIM3-213ENST00000629667 GNAI1P63096 354 aa20.19■□□□□ 0.82
PDLIM3-213ENST00000629667 CALD1Q05682 793 aaKnown RBP20.19■□□□□ 0.82
PDLIM3-213ENST00000629667 CDC5LQ99459 802 aaKnown RBP20.19■□□□□ 0.82
PDLIM3-213ENST00000629667 METTL22Q9BUU2 404 aaPredicted RBP20.19■□□□□ 0.82
PDLIM3-213ENST00000629667 IFT57Q9NWB7 429 aa20.19■□□□□ 0.82
PDLIM3-213ENST00000629667 SCAF8Q9UPN6 1271 aaKnown RBP20.18■□□□□ 0.82
PDLIM3-213ENST00000629667 MOB2Q70IA6 237 aa20.17■□□□□ 0.82
PDLIM3-213ENST00000629667 CHMP4AQ9BY43 222 aa20.17■□□□□ 0.82
PDLIM3-213ENST00000629667 HDAC9Q9UKV0 1011 aa20.17■□□□□ 0.82
PDLIM3-213ENST00000629667 UBE2Q2LH0YL09 131 aa20.16■□□□□ 0.82
PDLIM3-213ENST00000629667 CTSWP56202 376 aa20.16■□□□□ 0.82
PDLIM3-213ENST00000629667 TTLL12Q14166 644 aaPredicted RBP20.16■□□□□ 0.82
PDLIM3-213ENST00000629667 CCDC30Q5VVM6 783 aa20.16■□□□□ 0.82
PDLIM3-213ENST00000629667 OGFOD1Q8N543 542 aa20.16■□□□□ 0.82
PDLIM3-213ENST00000629667 PCDH10Q9P2E7 1040 aa20.16■□□□□ 0.82
PDLIM3-213ENST00000629667 APAF1O14727 1248 aa20.15■□□□□ 0.82
PDLIM3-213ENST00000629667 NBPF9Q3BBW0 867 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 630.4 ms