RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TDO2P48775 406 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 MCM2P49736 904 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 MAP3K12Q12852 859 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 SLFNL1Q499Z3 407 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 MCMDC2Q4G0Z9 681 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 LINC00116Q8NCU8 138 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 EIF5P55010 431 aaKnown RBP18.73■□□□□ 0.59
CPSF1-213ENST00000620219 KIF2CQ99661 725 aa18.73■□□□□ 0.59
CPSF1-213ENST00000620219 NOL10Q9BSC4 688 aaKnown RBP18.73■□□□□ 0.59
CPSF1-213ENST00000620219 CPLX1O14810 134 aa18.73■□□□□ 0.59
CPSF1-213ENST00000620219 NUCB2P80303 420 aa18.73■□□□□ 0.59
CPSF1-213ENST00000620219 AOX1Q06278 1338 aa18.73■□□□□ 0.59
CPSF1-213ENST00000620219 ROBO1Q9Y6N7 1651 aa18.73■□□□□ 0.59
CPSF1-213ENST00000620219 TRAK2O60296 914 aa18.72■□□□□ 0.59
CPSF1-213ENST00000620219 ATP5JP18859 108 aa18.72■□□□□ 0.59
CPSF1-213ENST00000620219 PTH1RQ03431 593 aa18.72■□□□□ 0.59
CPSF1-213ENST00000620219 ZNF622Q969S3 477 aaKnown RBP eCLIP18.72■□□□□ 0.598e-8■■□□□ 13.1
CPSF1-213ENST00000620219 SNX21Q969T3 373 aa18.72■□□□□ 0.59
CPSF1-213ENST00000620219 ANP32BQ92688 251 aaKnown RBP18.72■□□□□ 0.59
CPSF1-213ENST00000620219 ANTXR1Q9H6X2 564 aa18.72■□□□□ 0.59
CPSF1-213ENST00000620219 TMX3Q96JJ7 454 aa18.72■□□□□ 0.59
CPSF1-213ENST00000620219 MINDY4BA8MYZ0 360 aa18.71■□□□□ 0.59
CPSF1-213ENST00000620219 ST5P78524 1137 aa18.71■□□□□ 0.59
CPSF1-213ENST00000620219 CHST3Q7LGC8 479 aa18.71■□□□□ 0.59
CPSF1-213ENST00000620219 RAB11FIP4Q86YS3 637 aa18.71■□□□□ 0.59
CPSF1-213ENST00000620219 COL15A1P39059 1388 aa18.71■□□□□ 0.59
CPSF1-213ENST00000620219 MIGA1Q8NAN2 632 aa18.71■□□□□ 0.59
CPSF1-213ENST00000620219 CCDC171Q6TFL3 1326 aa18.71■□□□□ 0.59
CPSF1-213ENST00000620219 RXRBP28702 533 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 PUM3Q15397 648 aaKnown RBP18.7■□□□□ 0.58
CPSF1-213ENST00000620219 BCL9O00512 1426 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 DDX11L8A8MPP1 907 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 CHGBP05060 677 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 NECAB1Q8N987 351 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 DDX11Q96FC9 970 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 IMMTQ16891 758 aaKnown RBP18.7■□□□□ 0.58
CPSF1-213ENST00000620219 INTS5Q6P9B9 1019 aaKnown RBP18.7■□□□□ 0.58
CPSF1-213ENST00000620219 KBTBD3Q8NAB2 608 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 MARF1Q9Y4F3 1742 aaKnown RBP18.7■□□□□ 0.58
CPSF1-213ENST00000620219 TBC1D9BQ66K14 1250 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 CREB3L3Q68CJ9 461 aa18.7■□□□□ 0.58
CPSF1-213ENST00000620219 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.7■□□□□ 0.58
CPSF1-213ENST00000620219 UQCRFS1P1P0C7P4 283 aa18.69■□□□□ 0.58
CPSF1-213ENST00000620219 ARHGEF1Q92888 912 aaKnown RBP18.69■□□□□ 0.58
CPSF1-213ENST00000620219 RNF113AO15541 343 aaKnown RBP18.69■□□□□ 0.58
CPSF1-213ENST00000620219 PHKA1P46020 1223 aa18.69■□□□□ 0.58
CPSF1-213ENST00000620219 CHAMP1Q96JM3 812 aa18.69■□□□□ 0.58
CPSF1-213ENST00000620219 U3KPZ7 1027 aaPredicted RBP18.69■□□□□ 0.58
CPSF1-213ENST00000620219 BCAMP50895 628 aa18.69■□□□□ 0.58
CPSF1-213ENST00000620219 RPS6KA4O75676 772 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 NAPBQ9H115 298 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 PDE8BO95263 885 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 GYG1P46976 350 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 PKP1Q13835 747 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 RABL6Q3YEC7 729 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-213ENST00000620219 ZNF772Q68DY9 489 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-213ENST00000620219 MAGEB6Q8N7X4 407 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 CTNNA3Q9UI47 895 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 PXDNLA1KZ92 1463 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 TRPM3Q9HCF6 1732 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-213ENST00000620219 PLCB2Q00722 1185 aa18.68■□□□□ 0.58
CPSF1-213ENST00000620219 RPS8P62241 208 aaKnown RBP18.67■□□□□ 0.58
CPSF1-213ENST00000620219 SYNE3Q6ZMZ3 975 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 RASEFQ8IZ41 740 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 LPIN2Q92539 896 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 NACAP1Q9BZK3 213 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 SNX14Q9Y5W7 946 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 ZNF213O14771 459 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 KRT32Q14532 448 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 TTF1Q15361 905 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-213ENST00000620219 FERMT3Q86UX7 667 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 TNS2Q63HR2 1409 aa18.67■□□□□ 0.58
CPSF1-213ENST00000620219 RAD21O60216 631 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 PRPF40AO75400 957 aaKnown RBP18.66■□□□□ 0.58
CPSF1-213ENST00000620219 CHRNDQ07001 517 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 CCDC102BQ68D86 513 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 FNBP4Q8N3X1 1017 aaPredicted RBP18.66■□□□□ 0.58
CPSF1-213ENST00000620219 LIMCH1Q9UPQ0 1083 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 RAD50Q92878 1312 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 CAMTA2O94983 1202 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 CYP7A1P22680 504 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 CCT2P78371 535 aaKnown RBP18.66■□□□□ 0.58
CPSF1-213ENST00000620219 TRIM28Q13263 835 aaKnown RBP18.66■□□□□ 0.58
CPSF1-213ENST00000620219 NEK1Q96PY6 1258 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 ATG9AQ7Z3C6 839 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 ZNF589Q86UQ0 364 aaPredicted RBP18.66■□□□□ 0.58
CPSF1-213ENST00000620219 DZIP1Q86YF9 867 aaKnown RBP18.66■□□□□ 0.58
CPSF1-213ENST00000620219 ALS2Q96Q42 1657 aa18.66■□□□□ 0.58
CPSF1-213ENST00000620219 UBN2Q6ZU65 1347 aa18.65■□□□□ 0.58
CPSF1-213ENST00000620219 AK2P54819 239 aa18.65■□□□□ 0.58
CPSF1-213ENST00000620219 HAUS7Q99871 368 aa18.65■□□□□ 0.58
CPSF1-213ENST00000620219 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-213ENST00000620219 ERICH2A1L162 156 aa18.65■□□□□ 0.58
CPSF1-213ENST00000620219 RIMBP2O15034 1052 aa18.65■□□□□ 0.58
CPSF1-213ENST00000620219 RFX5P48382 616 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-213ENST00000620219 UTYO14607 1347 aa18.65■□□□□ 0.58
CPSF1-213ENST00000620219 BRF1Q92994 677 aa18.64■□□□□ 0.58
CPSF1-213ENST00000620219 GDPD2Q9HCC8 539 aa18.64■□□□□ 0.57
CPSF1-213ENST00000620219 ANAPC15P60006 121 aa18.64■□□□□ 0.57
CPSF1-213ENST00000620219 LRP10Q7Z4F1 713 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms