RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 IPO8O15397 1037 aaKnown RBP6.59□□□□□ -1.35
SHMT1-211ENST00000618902 RASSF7Q02833 373 aa6.59□□□□□ -1.35
SHMT1-211ENST00000618902 RABL6Q3YEC7 729 aaPredicted RBP6.59□□□□□ -1.35
SHMT1-211ENST00000618902 LMBR1LQ6UX01 489 aa6.59□□□□□ -1.35
SHMT1-211ENST00000618902 PNMA8AQ86V59 439 aaPredicted RBP6.59□□□□□ -1.35
SHMT1-211ENST00000618902 DZIP1LQ8IYY4 767 aaKnown RBP6.59□□□□□ -1.35
SHMT1-211ENST00000618902 GPC2Q8N158 579 aa6.59□□□□□ -1.35
SHMT1-211ENST00000618902 BICC1Q9H694 974 aaKnown RBP6.59□□□□□ -1.35
SHMT1-211ENST00000618902 C9orf78Q9NZ63 289 aaPredicted RBP6.59□□□□□ -1.35
SHMT1-211ENST00000618902 CACNA1SQ13698 1873 aa6.59□□□□□ -1.35
SHMT1-211ENST00000618902 MYH3P11055 1940 aa6.58□□□□□ -1.36
SHMT1-211ENST00000618902 FZD9O00144 591 aa6.58□□□□□ -1.36
SHMT1-211ENST00000618902 PPEF1O14829 653 aaPredicted RBP6.58□□□□□ -1.36
SHMT1-211ENST00000618902 ZBTB7BO15156 539 aaPredicted RBP6.58□□□□□ -1.36
SHMT1-211ENST00000618902 RFX5P48382 616 aaPredicted RBP6.58□□□□□ -1.36
SHMT1-211ENST00000618902 RRP1P56182 461 aaKnown RBP6.58□□□□□ -1.36
SHMT1-211ENST00000618902 ZNF594Q96JF6 807 aaPredicted RBP6.58□□□□□ -1.36
SHMT1-211ENST00000618902 CDC5LQ99459 802 aaKnown RBP6.58□□□□□ -1.36
SHMT1-211ENST00000618902 EYA3Q99504 573 aa6.58□□□□□ -1.36
SHMT1-211ENST00000618902 C1orf115Q9H7X2 142 aa6.58□□□□□ -1.36
SHMT1-211ENST00000618902 PODXL2Q9NZ53 605 aa6.58□□□□□ -1.36
SHMT1-211ENST00000618902 COG6Q9Y2V7 657 aa6.58□□□□□ -1.36
SHMT1-211ENST00000618902 LRRFIP2Q9Y608 721 aaKnown RBP6.58□□□□□ -1.36
SHMT1-211ENST00000618902 SNAP23O00161 211 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 MYCNP04198 464 aaPredicted RBP6.57□□□□□ -1.36
SHMT1-211ENST00000618902 ITGA6P23229 1130 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 IARSP41252 1262 aaKnown RBP6.57□□□□□ -1.36
SHMT1-211ENST00000618902 EIF6P56537 245 aaKnown RBP6.57□□□□□ -1.36
SHMT1-211ENST00000618902 RPS8P62241 208 aaKnown RBP6.57□□□□□ -1.36
SHMT1-211ENST00000618902 TNIP1Q15025 636 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 ITPRIPQ8IWB1 547 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 SMC1BQ8NDV3 1235 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 KLHDC4Q8TBB5 520 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 GPR101Q96P66 508 aaPredicted RBP6.57□□□□□ -1.36
SHMT1-211ENST00000618902 PUS3Q9BZE2 481 aaKnown RBP6.57□□□□□ -1.36
SHMT1-211ENST00000618902 COL4A5P29400 1685 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 DUOX1Q9NRD9 1551 aa6.57□□□□□ -1.36
SHMT1-211ENST00000618902 LRRC37AA6NMS7 1700 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 LTBP1Q14766 1721 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 SCN4AP35499 1836 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 KIF3CO14782 793 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 UBTFL1P0CB47 393 aaPredicted RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 HSPA6P17066 643 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 RPS12P25398 132 aaKnown RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 APLP1P51693 650 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 GPSM2P81274 684 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 KIAA2012Q0VF49 1180 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 PDE3AQ14432 1141 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 MVPQ14764 893 aaKnown RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 DPP8Q6V1X1 898 aaPredicted RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 FTSJ3Q8IY81 847 aaKnown RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 MPNDQ8N594 471 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 ZBTB40Q9NUA8 1239 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 BSDC1Q9NW68 430 aaPredicted RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 POLLQ9UGP5 575 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 PA2G4Q9UQ80 394 aaKnown RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.56□□□□□ -1.36
SHMT1-211ENST00000618902 WDR90Q96KV7 1748 aa6.56□□□□□ -1.36
SHMT1-211ENST00000618902 PNMA6EA0A0J9YXQ4 647 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 KLRK1P26718 216 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 PTPN12Q05209 780 aaKnown RBP6.55□□□□□ -1.36
SHMT1-211ENST00000618902 MTX1Q13505 466 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 LRRC24Q50LG9 513 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 ANKRD18AQ8IVF6 992 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 SIRT2Q8IXJ6 389 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 NIM1KQ8IY84 436 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 LARGE2Q8N3Y3 721 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 HELBQ8NG08 1087 aaPredicted RBP6.55□□□□□ -1.36
SHMT1-211ENST00000618902 ZC3H15Q8WU90 426 aaKnown RBP6.55□□□□□ -1.36
SHMT1-211ENST00000618902 DPF2Q92785 391 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 CRBNQ96SW2 442 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 ANKRD2Q9GZV1 360 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 ZNF277Q9NRM2 450 aaPredicted RBP6.55□□□□□ -1.36
SHMT1-211ENST00000618902 ZNRF3Q9ULT6 936 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 MINPP1Q9UNW1 487 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 CHMP3Q9Y3E7 222 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 RIPOR2Q9Y4F9 1068 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 SPEF2Q9C093 1822 aa6.55□□□□□ -1.36
SHMT1-211ENST00000618902 XDHP47989 1333 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 IRS2Q9Y4H2 1338 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 CCDC88AQ3V6T2 1871 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 ZNF609O15014 1411 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 ANKRD18BA2A2Z9 1011 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 GNAI2P04899 355 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 GNAI3P08754 354 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 ATP2B4P23634 1241 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 LMOD1P29536 600 aaPredicted RBP6.54□□□□□ -1.36
SHMT1-211ENST00000618902 IGHMBP2P38935 993 aaKnown RBP6.54□□□□□ -1.36
SHMT1-211ENST00000618902 IFIT5Q13325 482 aaKnown RBP6.54□□□□□ -1.36
SHMT1-211ENST00000618902 POLA2Q14181 598 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 WASHC4Q2M389 1173 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 CEP85Q6P2H3 762 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 USP50Q70EL3 339 aaPredicted RBP6.54□□□□□ -1.36
SHMT1-211ENST00000618902 ATG9AQ7Z3C6 839 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 PODNQ7Z5L7 613 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 TXNRD3Q86VQ6 643 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 LDHDQ86WU2 507 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 TBC1D16Q8TBP0 767 aa6.54□□□□□ -1.36
SHMT1-211ENST00000618902 ZC3H12CQ9C0D7 883 aaKnown RBP6.54□□□□□ -1.36
SHMT1-211ENST00000618902 HACL1Q9UJ83 578 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms