RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 POLLQ9UGP5 575 aa21.7■■□□□ 1.06
SHKBP1-212ENST00000596163 ZNRF3Q9ULT6 936 aa21.7■■□□□ 1.06
SHKBP1-212ENST00000596163 UFL1O94874 794 aa21.69■■□□□ 1.06
SHKBP1-212ENST00000596163 VEGFAP15692 232 aaPredicted RBP21.69■■□□□ 1.06
SHKBP1-212ENST00000596163 BICC1Q9H694 974 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-212ENST00000596163 DDNO94850 711 aaPredicted RBP21.68■■□□□ 1.06
SHKBP1-212ENST00000596163 RABL6Q3YEC7 729 aaPredicted RBP21.68■■□□□ 1.06
SHKBP1-212ENST00000596163 KAZALD1Q96I82 304 aa21.68■■□□□ 1.06
SHKBP1-212ENST00000596163 G3V3G9 751 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 KIF3CO14782 793 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 RIMBP2O15034 1052 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 GNAI3P08754 354 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 DCAF8Q5TAQ9 597 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 LDHAL6AQ6ZMR3 332 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 GPC2Q8N158 579 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 LEMD3Q9Y2U8 911 aa21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 DICER1Q9UPY3 1922 aaKnown RBP21.67■■□□□ 1.06
SHKBP1-212ENST00000596163 MS4A1P11836 297 aa21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 FTSJ3Q8IY81 847 aaKnown RBP21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 CLUAP1Q96AJ1 413 aa21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 CNNM1Q9NRU3 951 aa21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 MYH3P11055 1940 aa21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 TAF1P21675 1872 aa21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 CCDC88AQ3V6T2 1871 aa21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 LRRC37AA6NMS7 1700 aa21.66■■□□□ 1.06
SHKBP1-212ENST00000596163 ZNF541Q9H0D2 1346 aa21.65■■□□□ 1.06
SHKBP1-212ENST00000596163 IQCA1LA6NCM1 817 aa21.65■■□□□ 1.06
SHKBP1-212ENST00000596163 TNIP1Q15025 636 aa21.65■■□□□ 1.06
SHKBP1-212ENST00000596163 ANKRD44Q8N8A2 993 aa21.65■■□□□ 1.06
SHKBP1-212ENST00000596163 TIAM2Q8IVF5 1701 aa21.65■■□□□ 1.06
SHKBP1-212ENST00000596163 TOMM70O94826 608 aa21.64■■□□□ 1.05
SHKBP1-212ENST00000596163 KCNJ4P48050 445 aa21.64■■□□□ 1.05
SHKBP1-212ENST00000596163 DZIP1LQ8IYY4 767 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-212ENST00000596163 L3MBTL3Q96JM7 780 aaPredicted RBP21.64■■□□□ 1.05
SHKBP1-212ENST00000596163 RCAN3Q9UKA8 241 aa21.64■■□□□ 1.05
SHKBP1-212ENST00000596163 GJA3Q9Y6H8 435 aa21.64■■□□□ 1.05
SHKBP1-212ENST00000596163 COL4A1P02462 1669 aa21.63■■□□□ 1.05
SHKBP1-212ENST00000596163 CHRNDQ07001 517 aa21.63■■□□□ 1.05
SHKBP1-212ENST00000596163 CIAPIN1Q6FI81 312 aa21.63■■□□□ 1.05
SHKBP1-212ENST00000596163 ZNF594Q96JF6 807 aaPredicted RBP21.63■■□□□ 1.05
SHKBP1-212ENST00000596163 C1QTNF8P60827 252 aa21.62■■□□□ 1.05
SHKBP1-212ENST00000596163 MEIS3Q99687 375 aa21.62■■□□□ 1.05
SHKBP1-212ENST00000596163 ZNF804BA4D1E1 1349 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 LMOD1P29536 600 aaPredicted RBP21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 CXCL9Q07325 125 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 DOK7Q18PE1 504 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 TMEM57Q8N5G2 664 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 YTHDC1Q96MU7 727 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 DBNDD1Q9H9R9 158 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 HACL1Q9UJ83 578 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 TNNQ9UQP3 1299 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 LRRFIP2Q9Y608 721 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 DUOX1Q9NRD9 1551 aa21.61■■□□□ 1.05
SHKBP1-212ENST00000596163 ECE2O60344 883 aa21.6■■□□□ 1.05
SHKBP1-212ENST00000596163 RBM46Q8TBY0 533 aaKnown RBP21.6■■□□□ 1.05
SHKBP1-212ENST00000596163 GPR101Q96P66 508 aaPredicted RBP21.6■■□□□ 1.05
SHKBP1-212ENST00000596163 MED23Q9ULK4 1368 aa21.6■■□□□ 1.05
SHKBP1-212ENST00000596163 MROH5Q6ZUA9 1318 aa21.59■■□□□ 1.05
SHKBP1-212ENST00000596163 POTECB2RU33 542 aa21.59■■□□□ 1.05
SHKBP1-212ENST00000596163 RAD17O75943 681 aa21.59■■□□□ 1.05
SHKBP1-212ENST00000596163 GNAI2P04899 355 aa21.59■■□□□ 1.05
SHKBP1-212ENST00000596163 PODNQ7Z5L7 613 aa21.59■■□□□ 1.05
SHKBP1-212ENST00000596163 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.59■■□□□ 1.05
SHKBP1-212ENST00000596163 COL4A5P29400 1685 aa21.59■■□□□ 1.05
SHKBP1-212ENST00000596163 PLIN1O60240 522 aa21.58■■□□□ 1.05
SHKBP1-212ENST00000596163 HELBQ8NG08 1087 aaPredicted RBP21.58■■□□□ 1.05
SHKBP1-212ENST00000596163 WDR90Q96KV7 1748 aa21.58■■□□□ 1.04
SHKBP1-212ENST00000596163 YDJCA8MPS7 323 aa21.57■■□□□ 1.04
SHKBP1-212ENST00000596163 TAF5LO75529 589 aa21.57■■□□□ 1.04
SHKBP1-212ENST00000596163 PNMA8AQ86V59 439 aaPredicted RBP21.57■■□□□ 1.04
SHKBP1-212ENST00000596163 ITPRIPQ8IWB1 547 aa21.57■■□□□ 1.04
SHKBP1-212ENST00000596163 COA1Q9GZY4 146 aa21.57■■□□□ 1.04
SHKBP1-212ENST00000596163 FBXO3Q9UK99 471 aa21.57■■□□□ 1.04
SHKBP1-212ENST00000596163 RIPOR2Q9Y4F9 1068 aa21.57■■□□□ 1.04
SHKBP1-212ENST00000596163 FSTL1Q12841 308 aa21.56■■□□□ 1.04
SHKBP1-212ENST00000596163 PUS3Q9BZE2 481 aaKnown RBP21.56■■□□□ 1.04
SHKBP1-212ENST00000596163 TAF1DQ9H5J8 278 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-212ENST00000596163 LTBP1Q14766 1721 aa21.55■■□□□ 1.04
SHKBP1-212ENST00000596163 EPHX2P34913 555 aa21.55■■□□□ 1.04
SHKBP1-212ENST00000596163 UBE4AQ14139 1066 aa21.55■■□□□ 1.04
SHKBP1-212ENST00000596163 C15orf52Q6ZUT6 534 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-212ENST00000596163 SMC1BQ8NDV3 1235 aa21.55■■□□□ 1.04
SHKBP1-212ENST00000596163 EYA2O00167 538 aa21.54■■□□□ 1.04
SHKBP1-212ENST00000596163 RPS12P25398 132 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-212ENST00000596163 RFX5P48382 616 aaPredicted RBP21.54■■□□□ 1.04
SHKBP1-212ENST00000596163 PTPN12Q05209 780 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-212ENST00000596163 METTL24Q5JXM2 366 aa21.54■■□□□ 1.04
SHKBP1-212ENST00000596163 WTIPA6NIX2 430 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 PSMD14O00487 310 aa21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 GMPSP49915 693 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 SCNN1DP51172 638 aa21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 MTX1Q13505 466 aa21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 LRRC24Q50LG9 513 aa21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 DPF2Q92785 391 aa21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 CHMP4BQ9H444 224 aaKnown RBP21.53■■□□□ 1.04
SHKBP1-212ENST00000596163 USP17L3A6NCW0 530 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 USP17L4A6NCW7 530 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 ZBTB7BO15156 539 aaPredicted RBP21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 SRGAP3O43295 1099 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 VIL1P09327 827 aaKnown RBP21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms