RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 COPRSQ9NQ92 184 aa11.53□□□□□ -0.56
VPS25-205ENST00000590339 PA2G4Q9UQ80 394 aaKnown RBP11.53□□□□□ -0.56
VPS25-205ENST00000590339 ABCC12Q96J65 1359 aa11.53□□□□□ -0.56
VPS25-205ENST00000590339 NRXN2Q9P2S2 1712 aa11.52□□□□□ -0.56
VPS25-205ENST00000590339 NTSR2O95665 410 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 FOXO4P98177 505 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 TCIRG1Q13488 830 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 CCDC93Q567U6 631 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 HSP90AB3PQ58FF7 597 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 C3orf67Q6ZVT6 689 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 SYNE4Q8N205 404 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 C7orf43Q8WVR3 580 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 NLRP3Q96P20 1036 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 TTC41PQ6P2S7 1318 aa11.52□□□□□ -0.57
VPS25-205ENST00000590339 DDX60Q8IY21 1712 aaKnown RBP11.52□□□□□ -0.57
VPS25-205ENST00000590339 GLTPD2A6NH11 291 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 TOMM70O94826 608 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 SASH1O94885 1247 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 HCLS1P14317 486 aaPredicted RBP11.51□□□□□ -0.57
VPS25-205ENST00000590339 SOGA3Q5TF21 947 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 TSHZ3Q63HK5 1081 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 DPY19L2Q6NUT2 758 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 NLRP10Q86W26 655 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 ZNF277Q9NRM2 450 aaPredicted RBP11.51□□□□□ -0.57
VPS25-205ENST00000590339 TRMT112Q9UI30 125 aaKnown RBP11.51□□□□□ -0.57
VPS25-205ENST00000590339 CDHR2Q9BYE9 1310 aa11.51□□□□□ -0.57
VPS25-205ENST00000590339 PCCAP05165 728 aaPredicted RBP11.5□□□□□ -0.57
VPS25-205ENST00000590339 PTPN12Q05209 780 aaKnown RBP11.5□□□□□ -0.57
VPS25-205ENST00000590339 OS9Q13438 667 aaPredicted RBP11.5□□□□□ -0.57
VPS25-205ENST00000590339 CRY2Q49AN0 593 aa11.5□□□□□ -0.57
VPS25-205ENST00000590339 RTL5Q5HYW3 569 aaPredicted RBP11.5□□□□□ -0.57
VPS25-205ENST00000590339 RBM17Q96I25 401 aaKnown RBP11.5□□□□□ -0.57
VPS25-205ENST00000590339 PLA2G12BQ9BX93 195 aa11.5□□□□□ -0.57
VPS25-205ENST00000590339 ARAP2Q8WZ64 1704 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 DDNO94850 711 aaPredicted RBP11.49□□□□□ -0.57
VPS25-205ENST00000590339 HSPA6P17066 643 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 FKBP4Q02790 459 aaKnown RBP eCLIP11.49□□□□□ -0.57
VPS25-205ENST00000590339 SLC10A5Q5PT55 438 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 CASC1Q6TDU7 716 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 ERICH6Q7L0X2 663 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 SLC51AQ86UW1 340 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 RTKN2Q8IZC4 609 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 CLASRPQ8N2M8 674 aaKnown RBP11.49□□□□□ -0.57
VPS25-205ENST00000590339 KIF2CQ99661 725 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 ZNF609O15014 1411 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 SPEF2Q9C093 1822 aa11.49□□□□□ -0.57
VPS25-205ENST00000590339 VEGFAP15692 232 aaPredicted RBP11.48□□□□□ -0.57
VPS25-205ENST00000590339 G3BP1Q13283 466 aaKnown RBP eCLIP11.48□□□□□ -0.578e-8■■□□□ 13.7
VPS25-205ENST00000590339 BECN1Q14457 450 aa11.48□□□□□ -0.57
VPS25-205ENST00000590339 JARID2Q92833 1246 aaPredicted RBP11.48□□□□□ -0.57
VPS25-205ENST00000590339 FAM89AQ96GI7 184 aa11.48□□□□□ -0.57
VPS25-205ENST00000590339 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.48□□□□□ -0.57
VPS25-205ENST00000590339 BRCA1P38398 1863 aaKnown RBP11.48□□□□□ -0.57
VPS25-205ENST00000590339 ANKRD31Q8N7Z5 1873 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 SH3TC1Q8TE82 1336 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 LTBP3Q9NS15 1303 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 PPEF1O14829 653 aaPredicted RBP11.47□□□□□ -0.57
VPS25-205ENST00000590339 GLRX3O76003 335 aaKnown RBP11.47□□□□□ -0.57
VPS25-205ENST00000590339 CHMLP26374 656 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 HOXA10P31260 410 aaPredicted RBP11.47□□□□□ -0.57
VPS25-205ENST00000590339 LMBR1LQ6UX01 489 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 KLHDC4Q8TBB5 520 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 EAF2Q96CJ1 260 aaPredicted RBP11.47□□□□□ -0.57
VPS25-205ENST00000590339 CRAMP1Q96RY5 1269 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 ESYT1Q9BSJ8 1104 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 TMX4Q9H1E5 349 aaPredicted RBP11.47□□□□□ -0.57
VPS25-205ENST00000590339 ECHDC1Q9NTX5 307 aa11.47□□□□□ -0.57
VPS25-205ENST00000590339 ARFGEF1Q9Y6D6 1849 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 RIC1Q4ADV7 1423 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 ZC3H4Q9UPT8 1303 aaKnown RBP11.46□□□□□ -0.57
VPS25-205ENST00000590339 ERC2O15083 957 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 EPB41L2O43491 1005 aaKnown RBP11.46□□□□□ -0.57
VPS25-205ENST00000590339 REC8O95072 547 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 AACSQ86V21 672 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 ZBTB38Q8NAP3 1195 aaPredicted RBP11.46□□□□□ -0.57
VPS25-205ENST00000590339 RBM46Q8TBY0 533 aaKnown RBP11.46□□□□□ -0.57
VPS25-205ENST00000590339 SNX21Q969T3 373 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 GPATCH3Q96I76 525 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 ANP32EQ9BTT0 268 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 USP26Q9BXU7 913 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 TBC1D2Q9BYX2 928 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 BCL11AQ9H165 835 aa11.46□□□□□ -0.57
VPS25-205ENST00000590339 A0A1B0GUL6 1792 aa11.46□□□□□ -0.58
VPS25-205ENST00000590339 RFX7Q2KHR2 1363 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 SLX4Q8IY92 1834 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 POTECB2RU33 542 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 CIAO1O76071 339 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 CSF1RP07333 972 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 IFIT2P09913 472 aaKnown RBP11.45□□□□□ -0.58
VPS25-205ENST00000590339 IARSP41252 1262 aaKnown RBP11.45□□□□□ -0.58
VPS25-205ENST00000590339 TNNI3KQ59H18 835 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 CC2D2BQ6DHV5 1058 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 DDX46Q7L014 1031 aaKnown RBP11.45□□□□□ -0.58
VPS25-205ENST00000590339 ATG9AQ7Z3C6 839 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 IL17RAQ96F46 866 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 SIL1Q9H173 461 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 GPR108Q9NPR9 543 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 TLR7Q9NYK1 1049 aaKnown RBP11.45□□□□□ -0.58
VPS25-205ENST00000590339 FBXO3Q9UK99 471 aa11.45□□□□□ -0.58
VPS25-205ENST00000590339 FPGT-TNNI3KV9GXZ4 949 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms