RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 NFKBIEO00221 500 aa11.33□□□□□ -0.6
CHD9-219ENST00000569225 CIAO1O76071 339 aa11.33□□□□□ -0.6
CHD9-219ENST00000569225 BRCA1P38398 1863 aaKnown RBP11.33□□□□□ -0.6
CHD9-219ENST00000569225 RFX5P48382 616 aaPredicted RBP11.33□□□□□ -0.6
CHD9-219ENST00000569225 GPSM2P81274 684 aa11.33□□□□□ -0.6
CHD9-219ENST00000569225 PTPN12Q05209 780 aaKnown RBP11.33□□□□□ -0.6
CHD9-219ENST00000569225 PODXL2Q9NZ53 605 aa11.33□□□□□ -0.6
CHD9-219ENST00000569225 GGA1Q9UJY5 639 aa11.33□□□□□ -0.6
CHD9-219ENST00000569225 LMNB1P20700 586 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 ATP2B4P23634 1241 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 KCNJ4P48050 445 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 CHRNDQ07001 517 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 POLA2Q14181 598 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 SSH3Q8TE77 659 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 EYA3Q99504 573 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 RTFDC1Q9BY42 306 aaPredicted RBP11.32□□□□□ -0.6
CHD9-219ENST00000569225 VPS33BQ9H267 617 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 SLX4Q8IY92 1834 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 MYH3P11055 1940 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 PNMA6EA0A0J9YXQ4 647 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 C6orf229H3BNL8 230 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 UFL1O94874 794 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 IL15P40933 162 aaPredicted RBP11.32□□□□□ -0.6
CHD9-219ENST00000569225 METTL24Q5JXM2 366 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 KLHDC4Q8TBB5 520 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 LEMD3Q9Y2U8 911 aa11.32□□□□□ -0.6
CHD9-219ENST00000569225 RASSF7Q02833 373 aa11.31□□□□□ -0.6
CHD9-219ENST00000569225 G3BP1Q13283 466 aaKnown RBP eCLIP11.31□□□□□ -0.6
CHD9-219ENST00000569225 OS9Q13438 667 aaPredicted RBP11.31□□□□□ -0.6
CHD9-219ENST00000569225 TBC1D16Q8TBP0 767 aa11.31□□□□□ -0.6
CHD9-219ENST00000569225 PUS3Q9BZE2 481 aaKnown RBP11.31□□□□□ -0.6
CHD9-219ENST00000569225 SIL1Q9H173 461 aa11.31□□□□□ -0.6
CHD9-219ENST00000569225 RIPOR2Q9Y4F9 1068 aa11.31□□□□□ -0.6
CHD9-219ENST00000569225 ARFGEF1Q9Y6D6 1849 aa11.31□□□□□ -0.6
CHD9-219ENST00000569225 SNED1Q8TER0 1413 aa11.3□□□□□ -0.6
CHD9-219ENST00000569225 IARSP41252 1262 aaKnown RBP11.3□□□□□ -0.6
CHD9-219ENST00000569225 LRRC24Q50LG9 513 aa11.3□□□□□ -0.6
CHD9-219ENST00000569225 HSP90AB4PQ58FF6 505 aa11.3□□□□□ -0.6
CHD9-219ENST00000569225 ZNF277Q9NRM2 450 aaPredicted RBP11.3□□□□□ -0.6
CHD9-219ENST00000569225 PA2G4Q9UQ80 394 aaKnown RBP11.3□□□□□ -0.6
CHD9-219ENST00000569225 PPIP5K2O43314 1243 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 SURF6O75683 361 aaKnown RBP11.29□□□□□ -0.6
CHD9-219ENST00000569225 NEFLP07196 543 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 WASHC4Q2M389 1173 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 SLC51AQ86UW1 340 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 LARGE2Q8N3Y3 721 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 EXOC6Q8TAG9 804 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 JDP2Q8WYK2 163 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 ZC3H12CQ9C0D7 883 aaKnown RBP11.29□□□□□ -0.6
CHD9-219ENST00000569225 RNF181Q9P0P0 153 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 CEP126Q9P2H0 1117 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 COL4A1P02462 1669 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 ZNF804BA4D1E1 1349 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 LRRC37AA6NMS7 1700 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 KIAA2012Q0VF49 1180 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 C9orf131Q5VYM1 1079 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 ATG9AQ7Z3C6 839 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 ERC1Q8IUD2 1116 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 HELBQ8NG08 1087 aaPredicted RBP11.29□□□□□ -0.6
CHD9-219ENST00000569225 POLLQ9UGP5 575 aa11.29□□□□□ -0.6
CHD9-219ENST00000569225 NOP58Q9Y2X3 529 aaKnown RBP11.29□□□□□ -0.6
CHD9-219ENST00000569225 G3V3G9 751 aa11.28□□□□□ -0.6
CHD9-219ENST00000569225 TAF5LO75529 589 aa11.28□□□□□ -0.6
CHD9-219ENST00000569225 PDE8BO95263 885 aa11.28□□□□□ -0.6
CHD9-219ENST00000569225 IRX6P78412 446 aaPredicted RBP11.28□□□□□ -0.6
CHD9-219ENST00000569225 UBE4AQ14139 1066 aa11.28□□□□□ -0.6
CHD9-219ENST00000569225 PUM3Q15397 648 aaKnown RBP11.28□□□□□ -0.6
CHD9-219ENST00000569225 DCAF8Q5TAQ9 597 aa11.28□□□□□ -0.6
CHD9-219ENST00000569225 NIM1KQ8IY84 436 aa11.28□□□□□ -0.6
CHD9-219ENST00000569225 ZC3H4Q9UPT8 1303 aaKnown RBP11.28□□□□□ -0.6
CHD9-219ENST00000569225 AOC3Q16853 763 aa11.27□□□□□ -0.6
CHD9-219ENST00000569225 SIRT2Q8IXJ6 389 aa11.27□□□□□ -0.6
CHD9-219ENST00000569225 AKAP2Q9Y2D5 859 aa11.27□□□□□ -0.6
CHD9-219ENST00000569225 MED23Q9ULK4 1368 aa11.27□□□□□ -0.6
CHD9-219ENST00000569225 IFIT1P09914 478 aaKnown RBP11.27□□□□□ -0.61
CHD9-219ENST00000569225 VGLL2Q8N8G2 317 aa11.27□□□□□ -0.61
CHD9-219ENST00000569225 PCDHB15Q9Y5E8 787 aa11.27□□□□□ -0.61
CHD9-219ENST00000569225 RIMBP2O15034 1052 aa11.26□□□□□ -0.61
CHD9-219ENST00000569225 RAB11FIP3O75154 756 aa11.26□□□□□ -0.61
CHD9-219ENST00000569225 SLC5A1P13866 664 aa11.26□□□□□ -0.61
CHD9-219ENST00000569225 ATP2B3Q16720 1220 aa11.26□□□□□ -0.61
CHD9-219ENST00000569225 C15orf52Q6ZUT6 534 aaKnown RBP11.26□□□□□ -0.61
CHD9-219ENST00000569225 LPIN2Q92539 896 aa11.26□□□□□ -0.61
CHD9-219ENST00000569225 CACNA1SQ13698 1873 aa11.26□□□□□ -0.61
CHD9-219ENST00000569225 DUOX1Q9NRD9 1551 aa11.26□□□□□ -0.61
CHD9-219ENST00000569225 PRELPP51888 382 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 TFCP2Q12800 502 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 ZNF804AQ7Z570 1209 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 GPR101Q96P66 508 aaPredicted RBP11.25□□□□□ -0.61
CHD9-219ENST00000569225 RWDD1Q9H446 243 aaPredicted RBP11.25□□□□□ -0.61
CHD9-219ENST00000569225 ZNRF3Q9ULT6 936 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 EXOC6BQ9Y2D4 811 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 GOLGB1Q14789 3259 aaKnown RBP11.25□□□□□ -0.61
CHD9-219ENST00000569225 TAF1P21675 1872 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 EIF6P56537 245 aaKnown RBP11.25□□□□□ -0.61
CHD9-219ENST00000569225 HDAC1Q13547 482 aaPredicted RBP11.25□□□□□ -0.61
CHD9-219ENST00000569225 CAVIN4Q5BKX8 364 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 VPS37DQ86XT2 251 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 COA1Q9GZY4 146 aa11.25□□□□□ -0.61
CHD9-219ENST00000569225 GPR108Q9NPR9 543 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms