RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TM6SF1Q9BZW5 370 aa15.77■□□□□ 0.12
VPS4A-204ENST00000566354 NUP188Q5SRE5 1749 aa15.77■□□□□ 0.12
VPS4A-204ENST00000566354 CICQ96RK0 1608 aaPredicted RBP15.77■□□□□ 0.11
VPS4A-204ENST00000566354 ATP5J2-PTCD1G3V325 749 aa15.77■□□□□ 0.11
VPS4A-204ENST00000566354 ALDH1L1O75891 902 aa15.77■□□□□ 0.11
VPS4A-204ENST00000566354 NEXNQ0ZGT2 675 aa15.77■□□□□ 0.11
VPS4A-204ENST00000566354 OS9Q13438 667 aaPredicted RBP15.77■□□□□ 0.11
VPS4A-204ENST00000566354 MTERF4Q7Z6M4 381 aaKnown RBP15.77■□□□□ 0.11
VPS4A-204ENST00000566354 SH2B1Q9NRF2 756 aaPredicted RBP15.77■□□□□ 0.11
VPS4A-204ENST00000566354 NEURL1BA8MQ27 555 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 LINC00116Q8NCU8 138 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 KCNB2Q92953 911 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 ECHDC1Q9NTX5 307 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 CCDC87Q9NVE4 849 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 FAM13BQ9NYF5 915 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 HDAC5Q9UQL6 1122 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 COL5A3P25940 1745 aaPredicted RBP15.76■□□□□ 0.11
VPS4A-204ENST00000566354 TRIM37O94972 964 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 GPATCH3Q96I76 525 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 USP25Q9UHP3 1055 aa15.76■□□□□ 0.11
VPS4A-204ENST00000566354 AFDNP55196 1824 aaKnown RBP15.75■□□□□ 0.11
VPS4A-204ENST00000566354 ERC1Q8IUD2 1116 aa15.75■□□□□ 0.11
VPS4A-204ENST00000566354 ZSWIM6Q9HCJ5 1215 aa15.75■□□□□ 0.11
VPS4A-204ENST00000566354 PDRG1Q9NUG6 133 aa15.75■□□□□ 0.11
VPS4A-204ENST00000566354 C9orf78Q9NZ63 289 aaPredicted RBP15.75■□□□□ 0.11
VPS4A-204ENST00000566354 CYP46A1Q9Y6A2 500 aa15.75■□□□□ 0.11
VPS4A-204ENST00000566354 ZNF831Q5JPB2 1677 aa15.75■□□□□ 0.11
VPS4A-204ENST00000566354 ADCY5O95622 1261 aa15.74■□□□□ 0.11
VPS4A-204ENST00000566354 IL6STP40189 918 aaPredicted RBP15.74■□□□□ 0.11
VPS4A-204ENST00000566354 PIBF1Q8WXW3 757 aa15.74■□□□□ 0.11
VPS4A-204ENST00000566354 LARP6Q9BRS8 491 aaKnown RBP15.74■□□□□ 0.11
VPS4A-204ENST00000566354 LY75O60449 1722 aa15.74■□□□□ 0.11
VPS4A-204ENST00000566354 FIBPO43427 364 aa15.74■□□□□ 0.11
VPS4A-204ENST00000566354 HCLS1P14317 486 aaPredicted RBP15.74■□□□□ 0.11
VPS4A-204ENST00000566354 GJB2P29033 226 aa15.74■□□□□ 0.11
VPS4A-204ENST00000566354 JAKMIP1Q96N16 626 aaKnown RBP15.74■□□□□ 0.11
VPS4A-204ENST00000566354 CCNL1Q9UK58 526 aaPredicted RBP15.74■□□□□ 0.11
VPS4A-204ENST00000566354 TBC1D2BQ9UPU7 963 aa15.74■□□□□ 0.11
VPS4A-204ENST00000566354 GRM8O00222 908 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 EIF5P55010 431 aaKnown RBP15.73■□□□□ 0.11
VPS4A-204ENST00000566354 PTH1RQ03431 593 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 GCKRQ14397 625 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 KIF6Q6ZMV9 814 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 EVI5LQ96CN4 794 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 RREB1Q92766 1687 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 KDM4AO75164 1064 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 LARGE1O95461 756 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 IFIT2P09913 472 aaKnown RBP15.73■□□□□ 0.11
VPS4A-204ENST00000566354 CPA1P15085 419 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 ZKSCAN1P17029 563 aaPredicted RBP15.73■□□□□ 0.11
VPS4A-204ENST00000566354 PRPF40BQ6NWY9 871 aaKnown RBP15.73■□□□□ 0.11
VPS4A-204ENST00000566354 CCDC83Q8IWF9 413 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 JARID2Q92833 1246 aaPredicted RBP15.73■□□□□ 0.11
VPS4A-204ENST00000566354 MTMR6Q9Y217 621 aa15.73■□□□□ 0.11
VPS4A-204ENST00000566354 NECTIN1Q15223 517 aa15.72■□□□□ 0.11
VPS4A-204ENST00000566354 HLFQ16534 295 aa15.72■□□□□ 0.11
VPS4A-204ENST00000566354 FUCA2Q9BTY2 467 aa15.72■□□□□ 0.11
VPS4A-204ENST00000566354 MAP3K15Q6ZN16 1313 aa15.72■□□□□ 0.11
VPS4A-204ENST00000566354 ADCK5Q3MIX3 580 aa15.72■□□□□ 0.11
VPS4A-204ENST00000566354 SMIM5Q71RC9 77 aa15.72■□□□□ 0.11
VPS4A-204ENST00000566354 DZIP3Q86Y13 1208 aaKnown RBP15.72■□□□□ 0.11
VPS4A-204ENST00000566354 HIP1O00291 1037 aa15.71■□□□□ 0.11
VPS4A-204ENST00000566354 DNM1Q05193 864 aaKnown RBP15.71■□□□□ 0.11
VPS4A-204ENST00000566354 NOLC1Q14978 699 aaKnown RBP eCLIP15.71■□□□□ 0.11
VPS4A-204ENST00000566354 BBXQ8WY36 941 aaPredicted RBP15.71■□□□□ 0.11
VPS4A-204ENST00000566354 DNTTIP2Q5QJE6 756 aaKnown RBP15.71■□□□□ 0.1
VPS4A-204ENST00000566354 PRIMPOLQ96LW4 560 aa15.71■□□□□ 0.1
VPS4A-204ENST00000566354 UTYO14607 1347 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 CCDC171Q6TFL3 1326 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 TAF1LQ8IZX4 1826 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 HMGN5P82970 282 aaKnown RBP15.7■□□□□ 0.1
VPS4A-204ENST00000566354 TCIRG1Q13488 830 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 MYRIPQ8NFW9 859 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 KAZALD1Q96I82 304 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 SUCLG2Q96I99 432 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 LRRC4BQ9NT99 713 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 BCCIPQ9P287 314 aaKnown RBP eCLIP15.7■□□□□ 0.1
VPS4A-204ENST00000566354 NUP98P52948 1817 aa15.7■□□□□ 0.1
VPS4A-204ENST00000566354 A0A087WZG4 1122 aa15.69■□□□□ 0.1
VPS4A-204ENST00000566354 GIMAP6Q6P9H5 292 aa15.69■□□□□ 0.1
VPS4A-204ENST00000566354 GIGYF2Q6Y7W6 1299 aaKnown RBP15.69■□□□□ 0.1
VPS4A-204ENST00000566354 ZNF830Q96NB3 372 aaPredicted RBP15.69■□□□□ 0.1
VPS4A-204ENST00000566354 PSMA5P28066 241 aa15.69■□□□□ 0.1
VPS4A-204ENST00000566354 ME3Q16798 604 aa15.69■□□□□ 0.1
VPS4A-204ENST00000566354 UBE3BQ7Z3V4 1068 aa15.69■□□□□ 0.1
VPS4A-204ENST00000566354 MAP4K1Q92918 833 aa15.69■□□□□ 0.1
VPS4A-204ENST00000566354 CNTNAP4Q9C0A0 1308 aa15.69■□□□□ 0.1
VPS4A-204ENST00000566354 TPM3P06753 285 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 AACSQ86V21 672 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 ISCA1Q9BUE6 129 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 TTC12Q9H892 705 aaPredicted RBP15.68■□□□□ 0.1
VPS4A-204ENST00000566354 SPTLC3Q9NUV7 552 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 CWC25Q9NXE8 425 aaPredicted RBP15.68■□□□□ 0.1
VPS4A-204ENST00000566354 RBM8AQ9Y5S9 174 aaKnown RBP15.68■□□□□ 0.1
VPS4A-204ENST00000566354 COL15A1P39059 1388 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 VPS37CA5D8V6 355 aaPredicted RBP15.68■□□□□ 0.1
VPS4A-204ENST00000566354 PDCP20941 246 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 GPTP24298 496 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 CREB3L3Q68CJ9 461 aa15.68■□□□□ 0.1
VPS4A-204ENST00000566354 SNRKQ9NRH2 765 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms