RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 TBC1D10BQ4KMP7 808 aaPredicted RBP21.74■■□□□ 1.07
HDGFL3-203ENST00000563404 HHIPL1Q96JK4 782 aa21.74■■□□□ 1.07
HDGFL3-203ENST00000563404 EYA3Q99504 573 aa21.74■■□□□ 1.07
HDGFL3-203ENST00000563404 PODXL2Q9NZ53 605 aa21.74■■□□□ 1.07
HDGFL3-203ENST00000563404 TSKSQ9UJT2 592 aa21.74■■□□□ 1.07
HDGFL3-203ENST00000563404 PCCAP05165 728 aaPredicted RBP21.73■■□□□ 1.07
HDGFL3-203ENST00000563404 CALD1Q05682 793 aaKnown RBP21.73■■□□□ 1.07
HDGFL3-203ENST00000563404 TSPYL6Q8N831 410 aa21.73■■□□□ 1.07
HDGFL3-203ENST00000563404 CCDC191Q8NCU4 936 aa21.73■■□□□ 1.07
HDGFL3-203ENST00000563404 SCN9AQ15858 1988 aa21.72■■□□□ 1.07
HDGFL3-203ENST00000563404 ZEB1P37275 1124 aaPredicted RBP21.72■■□□□ 1.07
HDGFL3-203ENST00000563404 CCDC85AQ96PX6 553 aaPredicted RBP21.72■■□□□ 1.07
HDGFL3-203ENST00000563404 METTL22Q9BUU2 404 aaPredicted RBP21.72■■□□□ 1.07
HDGFL3-203ENST00000563404 PDE8AO60658 829 aa21.71■■□□□ 1.07
HDGFL3-203ENST00000563404 RPS12P25398 132 aaKnown RBP21.71■■□□□ 1.07
HDGFL3-203ENST00000563404 ABHD8Q96I13 439 aa21.71■■□□□ 1.07
HDGFL3-203ENST00000563404 BEGAINQ9BUH8 593 aa21.71■■□□□ 1.07
HDGFL3-203ENST00000563404 CWC25Q9NXE8 425 aaPredicted RBP21.71■■□□□ 1.07
HDGFL3-203ENST00000563404 UFL1O94874 794 aa21.7■■□□□ 1.06
HDGFL3-203ENST00000563404 VIL1P09327 827 aaKnown RBP21.7■■□□□ 1.06
HDGFL3-203ENST00000563404 CCDC152Q4G0S7 254 aa21.7■■□□□ 1.06
HDGFL3-203ENST00000563404 CCDC184Q52MB2 194 aa21.7■■□□□ 1.06
HDGFL3-203ENST00000563404 RBM26Q5T8P6 1007 aaKnown RBP21.7■■□□□ 1.06
HDGFL3-203ENST00000563404 ZIC5Q96T25 663 aa21.7■■□□□ 1.06
HDGFL3-203ENST00000563404 ZC3H12CQ9C0D7 883 aaKnown RBP21.7■■□□□ 1.06
HDGFL3-203ENST00000563404 ADM5C9JUS6 153 aa21.69■■□□□ 1.06
HDGFL3-203ENST00000563404 CCDC30Q5VVM6 783 aa21.69■■□□□ 1.06
HDGFL3-203ENST00000563404 ANKIB1Q9P2G1 1089 aa21.69■■□□□ 1.06
HDGFL3-203ENST00000563404 GGA1Q9UJY5 639 aa21.69■■□□□ 1.06
HDGFL3-203ENST00000563404 MAP3K2Q9Y2U5 619 aa21.69■■□□□ 1.06
HDGFL3-203ENST00000563404 IGKV5-2P06315 115 aa21.68■■□□□ 1.06
HDGFL3-203ENST00000563404 KRT26Q7Z3Y9 468 aa21.68■■□□□ 1.06
HDGFL3-203ENST00000563404 TSR2Q969E8 191 aaKnown RBP21.68■■□□□ 1.06
HDGFL3-203ENST00000563404 POLR2AP24928 1970 aaKnown RBP21.67■■□□□ 1.06
HDGFL3-203ENST00000563404 ASTN2O75129 1339 aaPredicted RBP21.67■■□□□ 1.06
HDGFL3-203ENST00000563404 WTIPA6NIX2 430 aaPredicted RBP21.67■■□□□ 1.06
HDGFL3-203ENST00000563404 DDX58O95786 925 aaKnown RBP21.67■■□□□ 1.06
HDGFL3-203ENST00000563404 HSP90B1P14625 803 aaKnown RBP21.67■■□□□ 1.06
HDGFL3-203ENST00000563404 BRPF1P55201 1214 aaPredicted RBP21.67■■□□□ 1.06
HDGFL3-203ENST00000563404 HUNKP57058 714 aa21.67■■□□□ 1.06
HDGFL3-203ENST00000563404 KIF4BQ2VIQ3 1234 aa21.66■■□□□ 1.06
HDGFL3-203ENST00000563404 PI4KAP2A4QPH2 592 aa21.65■■□□□ 1.06
HDGFL3-203ENST00000563404 KSR2Q6VAB6 950 aa21.65■■□□□ 1.06
HDGFL3-203ENST00000563404 PI4KAP1Q8N8J0 262 aa21.65■■□□□ 1.06
HDGFL3-203ENST00000563404 DCPSQ96C86 337 aaKnown RBP21.65■■□□□ 1.06
HDGFL3-203ENST00000563404 FAM155AB1AL88 458 aaPredicted RBP21.64■■□□□ 1.05
HDGFL3-203ENST00000563404 CTSWP56202 376 aa21.64■■□□□ 1.05
HDGFL3-203ENST00000563404 G2E3Q7L622 706 aa21.64■■□□□ 1.05
HDGFL3-203ENST00000563404 ANKRD18AQ8IVF6 992 aa21.64■■□□□ 1.05
HDGFL3-203ENST00000563404 GBA2Q9HCG7 927 aaPredicted RBP21.64■■□□□ 1.05
HDGFL3-203ENST00000563404 GGA3Q9NZ52 723 aa21.64■■□□□ 1.05
HDGFL3-203ENST00000563404 ZNF609O15014 1411 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 XDHP47989 1333 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 G3V3G9 751 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 CA12O43570 354 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 ZNF280AP59817 542 aaPredicted RBP21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 NOGQ13253 232 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 DCAF8Q5TAQ9 597 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 RSBN1LQ6PCB5 846 aaPredicted RBP21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 TTLL11Q8NHH1 800 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 GMLQ99445 158 aa21.63■■□□□ 1.05
HDGFL3-203ENST00000563404 CWF19L2Q2TBE0 894 aaKnown RBP21.62■■□□□ 1.05
HDGFL3-203ENST00000563404 RGMBQ6NW40 437 aa21.62■■□□□ 1.05
HDGFL3-203ENST00000563404 GREM2Q9H772 168 aa21.62■■□□□ 1.05
HDGFL3-203ENST00000563404 PSME4Q14997 1843 aa21.62■■□□□ 1.05
HDGFL3-203ENST00000563404 ATP2B4P23634 1241 aa21.61■■□□□ 1.05
HDGFL3-203ENST00000563404 WWC1Q8IX03 1113 aa21.61■■□□□ 1.05
HDGFL3-203ENST00000563404 AGBL3Q8NEM8 1001 aa21.61■■□□□ 1.05
HDGFL3-203ENST00000563404 CHMP4AQ9BY43 222 aa21.61■■□□□ 1.05
HDGFL3-203ENST00000563404 NEURL1BA8MQ27 555 aa21.6■■□□□ 1.05
HDGFL3-203ENST00000563404 SCARF1Q14162 830 aa21.6■■□□□ 1.05
HDGFL3-203ENST00000563404 CCDC27Q2M243 656 aa21.6■■□□□ 1.05
HDGFL3-203ENST00000563404 C2orf69Q8N8R5 385 aa21.6■■□□□ 1.05
HDGFL3-203ENST00000563404 CDCA5Q96FF9 252 aa21.6■■□□□ 1.05
HDGFL3-203ENST00000563404 CDC5LQ99459 802 aaKnown RBP21.6■■□□□ 1.05
HDGFL3-203ENST00000563404 MINPP1Q9UNW1 487 aa21.6■■□□□ 1.05
HDGFL3-203ENST00000563404 TWISTNBQ3B726 338 aaPredicted RBP21.59■■□□□ 1.05
HDGFL3-203ENST00000563404 ANGEL2Q5VTE6 544 aaKnown RBP21.59■■□□□ 1.05
HDGFL3-203ENST00000563404 SULF1Q8IWU6 871 aa21.59■■□□□ 1.05
HDGFL3-203ENST00000563404 STK31Q9BXU1 1019 aa21.59■■□□□ 1.05
HDGFL3-203ENST00000563404 BSDC1Q9NW68 430 aaPredicted RBP21.59■■□□□ 1.05
HDGFL3-203ENST00000563404 CASP8AP2Q9UKL3 1982 aa21.59■■□□□ 1.05
HDGFL3-203ENST00000563404 H7C1W4 665 aa21.58■■□□□ 1.05
HDGFL3-203ENST00000563404 PODNQ7Z5L7 613 aa21.58■■□□□ 1.05
HDGFL3-203ENST00000563404 SPEF2Q9C093 1822 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 USP17L3A6NCW0 530 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 USP17L4A6NCW7 530 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 CCDC85CA6NKD9 419 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 SLC4A2P04920 1241 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 USP17L8P0C7I0 530 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 ZNF157P51786 506 aaPredicted RBP21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 KIF23Q02241 960 aaPredicted RBP21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 NEXNQ0ZGT2 675 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 USP17L1Q7RTZ2 530 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 MXD3Q9BW11 206 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 MCOLN1Q9GZU1 580 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 MYOZ2Q9NPC6 264 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 SCAF8Q9UPN6 1271 aaKnown RBP21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 MED23Q9ULK4 1368 aa21.57■■□□□ 1.04
HDGFL3-203ENST00000563404 MYH3P11055 1940 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms