RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MYH3P11055 1940 aa21.43■■□□□ 1.02
CLK3-210ENST00000563112 YDJCA8MPS7 323 aa21.43■■□□□ 1.02
CLK3-210ENST00000563112 JMYQ8N9B5 988 aa21.43■■□□□ 1.02
CLK3-210ENST00000563112 PLA2G12BQ9BX93 195 aa21.43■■□□□ 1.02
CLK3-210ENST00000563112 E9PSI1 815 aa21.42■■□□□ 1.02
CLK3-210ENST00000563112 XDHP47989 1333 aa21.42■■□□□ 1.02
CLK3-210ENST00000563112 LTBP1Q14766 1721 aa21.42■■□□□ 1.02
CLK3-210ENST00000563112 RTL9Q8NET4 1388 aa21.42■■□□□ 1.02
CLK3-210ENST00000563112 GREM2Q9H772 168 aa21.42■■□□□ 1.02
CLK3-210ENST00000563112 TMEM88BA6NKF7 163 aa21.41■■□□□ 1.02
CLK3-210ENST00000563112 F6X3S4 739 aa21.41■■□□□ 1.02
CLK3-210ENST00000563112 CCER2I3L3R5 266 aa21.41■■□□□ 1.02
CLK3-210ENST00000563112 ECE2O60344 883 aa21.41■■□□□ 1.02
CLK3-210ENST00000563112 IGHMBP2P38935 993 aaKnown RBP21.41■■□□□ 1.02
CLK3-210ENST00000563112 DOK7Q18PE1 504 aa21.41■■□□□ 1.02
CLK3-210ENST00000563112 GPR101Q96P66 508 aaPredicted RBP21.41■■□□□ 1.02
CLK3-210ENST00000563112 BSDC1Q9NW68 430 aaPredicted RBP21.41■■□□□ 1.02
CLK3-210ENST00000563112 H7C1D1 291 aa21.4■■□□□ 1.02
CLK3-210ENST00000563112 ATP2B4P23634 1241 aa21.4■■□□□ 1.02
CLK3-210ENST00000563112 CNOT7Q9UIV1 285 aaKnown RBP21.4■■□□□ 1.02
CLK3-210ENST00000563112 PSMD14O00487 310 aa21.39■■□□□ 1.01
CLK3-210ENST00000563112 CASP7P55210 303 aa21.39■■□□□ 1.01
CLK3-210ENST00000563112 BEND3Q5T5X7 828 aa21.39■■□□□ 1.01
CLK3-210ENST00000563112 DPF2Q92785 391 aa21.38■■□□□ 1.01
CLK3-210ENST00000563112 MINPP1Q9UNW1 487 aa21.38■■□□□ 1.01
CLK3-210ENST00000563112 CSF1RP07333 972 aa21.37■■□□□ 1.01
CLK3-210ENST00000563112 ITGA6P23229 1130 aa21.37■■□□□ 1.01
CLK3-210ENST00000563112 RPS12P25398 132 aaKnown RBP21.37■■□□□ 1.01
CLK3-210ENST00000563112 MPHOSPH8Q99549 860 aa21.37■■□□□ 1.01
CLK3-210ENST00000563112 MKRN1Q9UHC7 482 aaKnown RBP21.37■■□□□ 1.01
CLK3-210ENST00000563112 ZBTB12Q9Y330 459 aaPredicted RBP21.37■■□□□ 1.01
CLK3-210ENST00000563112 SLFN5Q08AF3 891 aa21.36■■□□□ 1.01
CLK3-210ENST00000563112 SLC4A10Q6U841 1118 aa21.36■■□□□ 1.01
CLK3-210ENST00000563112 MICALL2Q8IY33 904 aa21.36■■□□□ 1.01
CLK3-210ENST00000563112 C9orf78Q9NZ63 289 aaPredicted RBP21.36■■□□□ 1.01
CLK3-210ENST00000563112 ANKRD18BA2A2Z9 1011 aa21.35■■□□□ 1.01
CLK3-210ENST00000563112 ALDH1L1O75891 902 aa21.35■■□□□ 1.01
CLK3-210ENST00000563112 FAM161AQ3B820 660 aa21.35■■□□□ 1.01
CLK3-210ENST00000563112 ZC3H15Q8WU90 426 aaKnown RBP21.35■■□□□ 1.01
CLK3-210ENST00000563112 SRCIN1Q9C0H9 1055 aa21.35■■□□□ 1.01
CLK3-210ENST00000563112 ANKRD2Q9GZV1 360 aa21.35■■□□□ 1.01
CLK3-210ENST00000563112 KCNQ5Q9NR82 932 aa21.35■■□□□ 1.01
CLK3-210ENST00000563112 GRM8O00222 908 aa21.34■■□□□ 1.01
CLK3-210ENST00000563112 CCT4P50991 539 aaKnown RBP21.34■■□□□ 1.01
CLK3-210ENST00000563112 CHMP3Q9Y3E7 222 aa21.34■■□□□ 1.01
CLK3-210ENST00000563112 SPEF2Q9C093 1822 aa21.34■■□□□ 1.01
CLK3-210ENST00000563112 VIL1P09327 827 aaKnown RBP21.33■■□□□ 1.01
CLK3-210ENST00000563112 IFIT5Q13325 482 aaKnown RBP21.33■■□□□ 1.01
CLK3-210ENST00000563112 PODNQ7Z5L7 613 aa21.33■■□□□ 1.01
CLK3-210ENST00000563112 MRPL50Q8N5N7 158 aaKnown RBP21.33■■□□□ 1.01
CLK3-210ENST00000563112 PGAP2Q9UHJ9 254 aa21.33■■□□□ 1.01
CLK3-210ENST00000563112 LEMD3Q9Y2U8 911 aa21.33■■□□□ 1.01
CLK3-210ENST00000563112 CNTNAP1P78357 1384 aa21.33■■□□□ 1
CLK3-210ENST00000563112 HIRAP54198 1017 aaPredicted RBP21.32■■□□□ 1
CLK3-210ENST00000563112 TRPM4Q8TD43 1214 aa21.32■■□□□ 1
CLK3-210ENST00000563112 ABT1Q9ULW3 272 aaKnown RBP21.32■■□□□ 1
CLK3-210ENST00000563112 MED23Q9ULK4 1368 aa21.32■■□□□ 1
CLK3-210ENST00000563112 SHTN1A0MZ66 631 aa21.31■■□□□ 1
CLK3-210ENST00000563112 FOXO4P98177 505 aa21.31■■□□□ 1
CLK3-210ENST00000563112 DEFB115Q30KQ5 88 aa21.31■■□□□ 1
CLK3-210ENST00000563112 PTPRCP08575 1304 aa21.3■■□□□ 1
CLK3-210ENST00000563112 TRAF5O00463 557 aa21.3■■□□□ 1
CLK3-210ENST00000563112 KCNJ4P48050 445 aa21.3■■□□□ 1
CLK3-210ENST00000563112 TBC1D10BQ4KMP7 808 aaPredicted RBP21.3■■□□□ 1
CLK3-210ENST00000563112 LMBR1LQ6UX01 489 aa21.3■■□□□ 1
CLK3-210ENST00000563112 CDC37L1Q7L3B6 337 aa21.3■■□□□ 1
CLK3-210ENST00000563112 SAMD7Q7Z3H4 446 aa21.3■■□□□ 1
CLK3-210ENST00000563112 AGBL3Q8NEM8 1001 aa21.3■■□□□ 1
CLK3-210ENST00000563112 CDCA7LQ96GN5 454 aa21.3■■□□□ 1
CLK3-210ENST00000563112 ZNF804BA4D1E1 1349 aa21.29■■□□□ 1
CLK3-210ENST00000563112 SCN9AQ15858 1988 aa21.29■■□□□ 1
CLK3-210ENST00000563112 USP17L3A6NCW0 530 aa21.29■■□□□ 1
CLK3-210ENST00000563112 USP17L4A6NCW7 530 aa21.29■■□□□ 1
CLK3-210ENST00000563112 CCDC57Q2TAC2 916 aa21.29■■□□□ 1
CLK3-210ENST00000563112 RBM26Q5T8P6 1007 aaKnown RBP21.29■■□□□ 1
CLK3-210ENST00000563112 RSBN1LQ6PCB5 846 aaPredicted RBP21.29■■□□□ 1
CLK3-210ENST00000563112 USP17L1Q7RTZ2 530 aa21.29■■□□□ 1
CLK3-210ENST00000563112 SSH1Q8WYL5 1049 aa21.29■■□□□ 1
CLK3-210ENST00000563112 GLIS2Q9BZE0 524 aaPredicted RBP21.29■■□□□ 1
CLK3-210ENST00000563112 WTIPA6NIX2 430 aaPredicted RBP21.28■■□□□ 1
CLK3-210ENST00000563112 RASSF10A6NK89 507 aa21.28■■□□□ 1
CLK3-210ENST00000563112 FMR1Q06787 632 aaKnown RBP eCLIP21.28■■□□□ 1
CLK3-210ENST00000563112 CHRNDQ07001 517 aa21.28■■□□□ 1
CLK3-210ENST00000563112 ALDH1L2Q3SY69 923 aa21.28■■□□□ 1
CLK3-210ENST00000563112 TAF7LQ5H9L4 462 aa21.28■■□□□ 1
CLK3-210ENST00000563112 COA1Q9GZY4 146 aa21.28■■□□□ 1
CLK3-210ENST00000563112 TRPM7Q96QT4 1865 aa21.28■■□□□ 1
CLK3-210ENST00000563112 HSPA1AP0DMV8 641 aaKnown RBP21.27■■□□□ 1
CLK3-210ENST00000563112 HSPA1BP0DMV9 641 aaKnown RBP21.27■■□□□ 1
CLK3-210ENST00000563112 VEGFBP49765 207 aa21.27■■□□□ 1
CLK3-210ENST00000563112 EPHA10Q5JZY3 1008 aa21.27■■□□□ 1
CLK3-210ENST00000563112 CT47B1P0C2W7 299 aaPredicted RBP21.26■□□□□ 0.99
CLK3-210ENST00000563112 KIF4BQ2VIQ3 1234 aa21.26■□□□□ 0.99
CLK3-210ENST00000563112 TRMT2AQ8IZ69 625 aaKnown RBP21.26■□□□□ 0.99
CLK3-210ENST00000563112 DCPSQ96C86 337 aaKnown RBP21.26■□□□□ 0.99
CLK3-210ENST00000563112 CELF2O95319 508 aaKnown RBP21.25■□□□□ 0.99
CLK3-210ENST00000563112 CST9Q5W186 159 aa21.25■□□□□ 0.99
CLK3-210ENST00000563112 FBXW7Q969H0 707 aa21.25■□□□□ 0.99
CLK3-210ENST00000563112 SMC4Q9NTJ3 1288 aa21.25■□□□□ 0.99
CLK3-210ENST00000563112 PSME4Q14997 1843 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms