RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 EDC3Q96F86 508 aaKnown RBP25.87■■□□□ 1.73
CLN3-209ENST00000561689 RBM25P49756 843 aaKnown RBP25.86■■□□□ 1.73
CLN3-209ENST00000561689 EN1Q05925 392 aaPredicted RBP25.86■■□□□ 1.73
CLN3-209ENST00000561689 COL23A1Q86Y22 540 aaPredicted RBP25.86■■□□□ 1.73
CLN3-209ENST00000561689 CNBD1Q8NA66 436 aa25.86■■□□□ 1.73
CLN3-209ENST00000561689 CDC5LQ99459 802 aaKnown RBP25.86■■□□□ 1.73
CLN3-209ENST00000561689 MROH5Q6ZUA9 1318 aa25.86■■□□□ 1.73
CLN3-209ENST00000561689 EZH2Q15910 746 aaKnown RBP25.86■■□□□ 1.73
CLN3-209ENST00000561689 DDRGK1Q96HY6 314 aa25.86■■□□□ 1.73
CLN3-209ENST00000561689 DNAJC2Q99543 621 aaKnown RBP25.86■■□□□ 1.73
CLN3-209ENST00000561689 REC8O95072 547 aa25.85■■□□□ 1.73
CLN3-209ENST00000561689 TM4SF1P30408 202 aa25.85■■□□□ 1.73
CLN3-209ENST00000561689 GORABQ5T7V8 394 aa25.85■■□□□ 1.73
CLN3-209ENST00000561689 HAUS7Q99871 368 aa25.85■■□□□ 1.73
CLN3-209ENST00000561689 USP26Q9BXU7 913 aa25.85■■□□□ 1.73
CLN3-209ENST00000561689 LRP5O75197 1615 aa25.85■■□□□ 1.73
CLN3-209ENST00000561689 IL25Q9H293 177 aa25.84■■□□□ 1.73
CLN3-209ENST00000561689 TAF5LO75529 589 aa25.84■■□□□ 1.73
CLN3-209ENST00000561689 ANKRD18AQ8IVF6 992 aa25.84■■□□□ 1.73
CLN3-209ENST00000561689 PRR5LQ6MZQ0 368 aa25.83■■□□□ 1.73
CLN3-209ENST00000561689 CWC27Q6UX04 472 aaKnown RBP25.83■■□□□ 1.73
CLN3-209ENST00000561689 CAMKK2Q96RR4 588 aa25.83■■□□□ 1.73
CLN3-209ENST00000561689 FSD1Q9BTV5 496 aa25.83■■□□□ 1.73
CLN3-209ENST00000561689 COL4A1P02462 1669 aa25.83■■□□□ 1.73
CLN3-209ENST00000561689 SERPINB2P05120 415 aa25.82■■□□□ 1.72
CLN3-209ENST00000561689 CCDC158Q5M9N0 1113 aa25.82■■□□□ 1.72
CLN3-209ENST00000561689 CELF1Q92879 486 aaKnown RBP25.82■■□□□ 1.72
CLN3-209ENST00000561689 DIAPH3Q9NSV4 1193 aa25.82■■□□□ 1.72
CLN3-209ENST00000561689 DDR1Q08345 913 aa25.82■■□□□ 1.72
CLN3-209ENST00000561689 PUM3Q15397 648 aaKnown RBP25.82■■□□□ 1.72
CLN3-209ENST00000561689 SNAP23O00161 211 aa25.81■■□□□ 1.72
CLN3-209ENST00000561689 IFIT1P09914 478 aaKnown RBP25.8■■□□□ 1.72
CLN3-209ENST00000561689 TTC39AQ5SRH9 613 aa25.8■■□□□ 1.72
CLN3-209ENST00000561689 ANO2Q9NQ90 1003 aa25.8■■□□□ 1.72
CLN3-209ENST00000561689 CHRNDQ07001 517 aa25.8■■□□□ 1.72
CLN3-209ENST00000561689 DDX46Q7L014 1031 aaKnown RBP25.8■■□□□ 1.72
CLN3-209ENST00000561689 PNPLA7Q6ZV29 1317 aa25.79■■□□□ 1.72
CLN3-209ENST00000561689 POLRMTO00411 1230 aaKnown RBP25.79■■□□□ 1.72
CLN3-209ENST00000561689 FGFR2P21802 821 aa25.79■■□□□ 1.72
CLN3-209ENST00000561689 FLAD1Q8NFF5 587 aa25.79■■□□□ 1.72
CLN3-209ENST00000561689 BSDC1Q9NW68 430 aaPredicted RBP25.79■■□□□ 1.72
CLN3-209ENST00000561689 GOLIM4O00461 696 aa25.78■■□□□ 1.72
CLN3-209ENST00000561689 SGSM2O43147 1006 aa25.78■■□□□ 1.72
CLN3-209ENST00000561689 LPIN2Q92539 896 aa25.78■■□□□ 1.72
CLN3-209ENST00000561689 KIF2CQ99661 725 aa25.78■■□□□ 1.72
CLN3-209ENST00000561689 ANO8Q9HCE9 1232 aaPredicted RBP25.78■■□□□ 1.72
CLN3-209ENST00000561689 SLC4A3P48751 1232 aa25.77■■□□□ 1.72
CLN3-209ENST00000561689 RPS8P62241 208 aaKnown RBP25.77■■□□□ 1.72
CLN3-209ENST00000561689 ST5P78524 1137 aa25.77■■□□□ 1.72
CLN3-209ENST00000561689 NLGN1Q8N2Q7 840 aa25.77■■□□□ 1.72
CLN3-209ENST00000561689 PAG1Q9NWQ8 432 aa25.77■■□□□ 1.72
CLN3-209ENST00000561689 AK9Q5TCS8 1911 aa25.77■■□□□ 1.72
CLN3-209ENST00000561689 SF3B2Q13435 895 aaKnown RBP25.76■■□□□ 1.72
CLN3-209ENST00000561689 SCARF1Q14162 830 aa25.76■■□□□ 1.72
CLN3-209ENST00000561689 FAM227BQ96M60 508 aa25.76■■□□□ 1.72
CLN3-209ENST00000561689 SNRKQ9NRH2 765 aa25.76■■□□□ 1.72
CLN3-209ENST00000561689 FKBP4Q02790 459 aaKnown RBP eCLIP25.76■■□□□ 1.71
CLN3-209ENST00000561689 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.76■■□□□ 1.71
CLN3-209ENST00000561689 RUFY2Q8WXA3 655 aa25.76■■□□□ 1.71
CLN3-209ENST00000561689 HIP1O00291 1037 aa25.75■■□□□ 1.71
CLN3-209ENST00000561689 SLC5A1P13866 664 aa25.75■■□□□ 1.71
CLN3-209ENST00000561689 NMIQ13287 307 aaPredicted RBP25.75■■□□□ 1.71
CLN3-209ENST00000561689 DEFB132Q7Z7B7 95 aa25.75■■□□□ 1.71
CLN3-209ENST00000561689 MINPP1Q9UNW1 487 aa25.75■■□□□ 1.71
CLN3-209ENST00000561689 RGPD3A6NKT7 1758 aaPredicted RBP25.75■■□□□ 1.71
CLN3-209ENST00000561689 RGPD4Q7Z3J3 1758 aa25.75■■□□□ 1.71
CLN3-209ENST00000561689 TNRC6CQ9HCJ0 1690 aaKnown RBP25.74■■□□□ 1.71
CLN3-209ENST00000561689 SLC15A2Q16348 729 aa25.74■■□□□ 1.71
CLN3-209ENST00000561689 CCDC102BQ68D86 513 aa25.74■■□□□ 1.71
CLN3-209ENST00000561689 ANTXR1Q9H6X2 564 aa25.74■■□□□ 1.71
CLN3-209ENST00000561689 SPEF2Q9C093 1822 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 TAF1P21675 1872 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 CHGBP05060 677 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 PHKA1P46020 1223 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 PI16Q6UXB8 463 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 KBTBD3Q8NAB2 608 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 A0A0D9SFI3 127 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 MSL1Q68DK7 614 aa25.73■■□□□ 1.71
CLN3-209ENST00000561689 WTIPA6NIX2 430 aaPredicted RBP25.72■■□□□ 1.71
CLN3-209ENST00000561689 BAG6P46379 1132 aa25.72■■□□□ 1.71
CLN3-209ENST00000561689 STK32BQ9NY57 414 aa25.72■■□□□ 1.71
CLN3-209ENST00000561689 MCAMP43121 646 aa25.71■■□□□ 1.71
CLN3-209ENST00000561689 ZAP70P43403 619 aa25.71■■□□□ 1.71
CLN3-209ENST00000561689 ERICH6Q7L0X2 663 aa25.71■■□□□ 1.71
CLN3-209ENST00000561689 DAXXQ9UER7 740 aaPredicted RBP25.71■■□□□ 1.71
CLN3-209ENST00000561689 CASZ1Q86V15 1759 aa25.71■■□□□ 1.71
CLN3-209ENST00000561689 KIAA1211Q6ZU35 1233 aa25.71■■□□□ 1.71
CLN3-209ENST00000561689 MMP10P09238 476 aa25.7■■□□□ 1.7
CLN3-209ENST00000561689 RPGRQ92834 1020 aaKnown RBP25.7■■□□□ 1.7
CLN3-209ENST00000561689 ZNF512BQ96KM6 892 aaPredicted RBP25.7■■□□□ 1.7
CLN3-209ENST00000561689 LSG1Q9H089 658 aaKnown RBP25.7■■□□□ 1.7
CLN3-209ENST00000561689 GRAPQ13588 217 aa25.69■■□□□ 1.7
CLN3-209ENST00000561689 CRY2Q49AN0 593 aa25.69■■□□□ 1.7
CLN3-209ENST00000561689 GRAPLQ8TC17 118 aaPredicted RBP25.69■■□□□ 1.7
CLN3-209ENST00000561689 ARID4AP29374 1257 aaPredicted RBP25.68■■□□□ 1.7
CLN3-209ENST00000561689 BCAMP50895 628 aa25.68■■□□□ 1.7
CLN3-209ENST00000561689 BECN1Q14457 450 aa25.68■■□□□ 1.7
CLN3-209ENST00000561689 SLFNL1Q499Z3 407 aa25.68■■□□□ 1.7
CLN3-209ENST00000561689 RFX7Q2KHR2 1363 aa25.67■■□□□ 1.7
CLN3-209ENST00000561689 UQCRFS1P1P0C7P4 283 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms