RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 BSDC1Q9NW68 430 aaPredicted RBP12.58□□□□□ -0.4
USP3-219ENST00000561326 ABCC12Q96J65 1359 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 PDE8BO95263 885 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 MMP10P09238 476 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 SDSP20132 328 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 TIMM10P62072 90 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 DDR1Q08345 913 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 CCDC158Q5M9N0 1113 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 CNTROBQ8N137 903 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 RILPL2Q969X0 211 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 BRIP1Q9BX63 1249 aa12.57□□□□□ -0.4
USP3-219ENST00000561326 ANO8Q9HCE9 1232 aaPredicted RBP12.57□□□□□ -0.4
USP3-219ENST00000561326 A0A1B0GUL7 405 aa12.56□□□□□ -0.4
USP3-219ENST00000561326 GSPT1P15170 499 aaKnown RBP12.56□□□□□ -0.4
USP3-219ENST00000561326 ATP5JP18859 108 aa12.56□□□□□ -0.4
USP3-219ENST00000561326 PDE6BP35913 854 aa12.56□□□□□ -0.4
USP3-219ENST00000561326 ATP2B3Q16720 1220 aa12.56□□□□□ -0.4
USP3-219ENST00000561326 CCDC24Q8N4L8 307 aa12.56□□□□□ -0.4
USP3-219ENST00000561326 PI4K2BQ8TCG2 481 aa12.56□□□□□ -0.4
USP3-219ENST00000561326 RBM17Q96I25 401 aaKnown RBP12.56□□□□□ -0.4
USP3-219ENST00000561326 NRXN2Q9P2S2 1712 aa12.56□□□□□ -0.4
USP3-219ENST00000561326 SLC5A1P13866 664 aa12.55□□□□□ -0.4
USP3-219ENST00000561326 PUM3Q15397 648 aaKnown RBP12.55□□□□□ -0.4
USP3-219ENST00000561326 TSHZ3Q63HK5 1081 aa12.55□□□□□ -0.4
USP3-219ENST00000561326 C3orf67Q6ZVT6 689 aa12.55□□□□□ -0.4
USP3-219ENST00000561326 EVI5LQ96CN4 794 aa12.55□□□□□ -0.4
USP3-219ENST00000561326 ANKRD2Q9GZV1 360 aa12.55□□□□□ -0.4
USP3-219ENST00000561326 DBNLQ9UJU6 430 aaKnown RBP12.55□□□□□ -0.4
USP3-219ENST00000561326 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.55□□□□□ -0.4
USP3-219ENST00000561326 BBOX1O75936 387 aa12.54□□□□□ -0.4
USP3-219ENST00000561326 IFIT1P09914 478 aaKnown RBP12.54□□□□□ -0.4
USP3-219ENST00000561326 CRY2Q49AN0 593 aa12.54□□□□□ -0.4
USP3-219ENST00000561326 LPIN2Q92539 896 aa12.54□□□□□ -0.4
USP3-219ENST00000561326 XAGE2Q96GT9 111 aa12.54□□□□□ -0.4
USP3-219ENST00000561326 DBNDD2Q9BQY9 259 aa12.54□□□□□ -0.4
USP3-219ENST00000561326 ZNF609O15014 1411 aa12.54□□□□□ -0.4
USP3-219ENST00000561326 ANKRD31Q8N7Z5 1873 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 KLRG2A4D1S0 409 aaPredicted RBP12.53□□□□□ -0.4
USP3-219ENST00000561326 HIP1O00291 1037 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 HOXA10P31260 410 aaPredicted RBP12.53□□□□□ -0.4
USP3-219ENST00000561326 CHRNDQ07001 517 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 GRAPQ13588 217 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 UBE4AQ14139 1066 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 TTC39AQ5SRH9 613 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 MSL1Q68DK7 614 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 TBC1D9Q6ZT07 1266 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 TMC4Q7Z404 712 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 TICAM2Q86XR7 235 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 VGLL2Q8N8G2 317 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 HELBQ8NG08 1087 aaPredicted RBP12.53□□□□□ -0.4
USP3-219ENST00000561326 GRAPLQ8TC17 118 aaPredicted RBP12.53□□□□□ -0.4
USP3-219ENST00000561326 CELF1Q92879 486 aaKnown RBP12.53□□□□□ -0.4
USP3-219ENST00000561326 CRAMP1Q96RY5 1269 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 BOLA2Q9H3K6 86 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 TLR7Q9NYK1 1049 aaKnown RBP12.53□□□□□ -0.4
USP3-219ENST00000561326 MINPP1Q9UNW1 487 aa12.53□□□□□ -0.4
USP3-219ENST00000561326 RBM19Q9Y4C8 960 aaKnown RBP12.53□□□□□ -0.4
USP3-219ENST00000561326 TNRC6CQ9HCJ0 1690 aaKnown RBP12.52□□□□□ -0.4
USP3-219ENST00000561326 NPR1P16066 1061 aa12.52□□□□□ -0.41
USP3-219ENST00000561326 ALDH1B1P30837 517 aa12.52□□□□□ -0.41
USP3-219ENST00000561326 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP3-219ENST00000561326 UPF1Q92900 1129 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP3-219ENST00000561326 HAUS7Q99871 368 aa12.52□□□□□ -0.41
USP3-219ENST00000561326 TMX4Q9H1E5 349 aaPredicted RBP12.52□□□□□ -0.41
USP3-219ENST00000561326 LRP5O75197 1615 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 ARAP2Q8WZ64 1704 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 A0A1B0GUL6 1792 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 H0YIN7 160 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 TAF5LO75529 589 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 MAP4K4O95819 1239 aaPredicted RBP12.51□□□□□ -0.41
USP3-219ENST00000561326 UQCRFS1P1P0C7P4 283 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 FGFR2P21802 821 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 KCNJ4P48050 445 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 LRRFIP1Q32MZ4 808 aaKnown RBP12.51□□□□□ -0.41
USP3-219ENST00000561326 RUFY2Q8WXA3 655 aa12.51□□□□□ -0.41
USP3-219ENST00000561326 ZNF512BQ96KM6 892 aaPredicted RBP12.51□□□□□ -0.41
USP3-219ENST00000561326 MYH7P12883 1935 aa12.5□□□□□ -0.41
USP3-219ENST00000561326 AKAP11Q9UKA4 1901 aa12.5□□□□□ -0.41
USP3-219ENST00000561326 REC8O95072 547 aa12.5□□□□□ -0.41
USP3-219ENST00000561326 CAVIN4Q5BKX8 364 aa12.5□□□□□ -0.41
USP3-219ENST00000561326 MASTLQ96GX5 879 aa12.5□□□□□ -0.41
USP3-219ENST00000561326 GNL3LQ9NVN8 582 aaKnown RBP12.5□□□□□ -0.41
USP3-219ENST00000561326 MYH13Q9UKX3 1938 aa12.5□□□□□ -0.41
USP3-219ENST00000561326 SRGNP10124 158 aa12.49□□□□□ -0.41
USP3-219ENST00000561326 CHMLP26374 656 aa12.49□□□□□ -0.41
USP3-219ENST00000561326 ADORA1P30542 326 aa12.49□□□□□ -0.41
USP3-219ENST00000561326 FSD1Q9BTV5 496 aa12.49□□□□□ -0.41
USP3-219ENST00000561326 DIAPH3Q9NSV4 1193 aa12.49□□□□□ -0.41
USP3-219ENST00000561326 ANKIB1Q9P2G1 1089 aa12.49□□□□□ -0.41
USP3-219ENST00000561326 LEMD3Q9Y2U8 911 aa12.49□□□□□ -0.41
USP3-219ENST00000561326 CACNA1SQ13698 1873 aa12.48□□□□□ -0.41
USP3-219ENST00000561326 SEC24BO95487 1268 aa12.48□□□□□ -0.41
USP3-219ENST00000561326 POLD1P28340 1107 aa12.48□□□□□ -0.41
USP3-219ENST00000561326 MFAP1P55081 439 aaKnown RBP12.48□□□□□ -0.41
USP3-219ENST00000561326 FKBP4Q02790 459 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP3-219ENST00000561326 TTF1Q15361 905 aaPredicted RBP12.48□□□□□ -0.41
USP3-219ENST00000561326 CCDC102BQ68D86 513 aa12.48□□□□□ -0.41
USP3-219ENST00000561326 VPS37DQ86XT2 251 aa12.48□□□□□ -0.41
USP3-219ENST00000561326 C2CD5Q86YS7 1000 aa12.48□□□□□ -0.41
USP3-219ENST00000561326 DNAJC2Q99543 621 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms